Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c18
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078...    29   3.9  
05_04_0061 + 17582368-17582606,17582716-17583090,17593677-17594265     29   3.9  
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089...    28   6.8  
11_06_0117 + 20302795-20304816                                         28   9.0  

>08_02_1332 +
           26207164-26207257,26207454-26207530,26207771-26207841,
           26208448-26208502,26209066-26209187,26209272-26209353,
           26210070-26210160,26210759-26210982,26211294-26211413,
           26211523-26211705
          Length = 372

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 8/45 (17%)
 Frame = +3

Query: 138 AIRAAIMTLTKRKNSPENEEL--------IENGDAPNEGRSNIKG 248
           ++ +AI  L + +N P+ ++L        IE GD PNE R++I+G
Sbjct: 35  SLESAINWLLEHENDPDIDQLPLIPREINIECGDTPNEARNDIQG 79


>05_04_0061 + 17582368-17582606,17582716-17583090,17593677-17594265
          Length = 400

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -1

Query: 160 VIIAALIALMFAVLNQDHTNMKIEIDL 80
           V++ AL+A    +  QDHTNM++E DL
Sbjct: 130 VMVEALVATQQNMKFQDHTNMELEDDL 156


>10_08_0190 +
           15607241-15607409,15607932-15607990,15608883-15608991,
           15609394-15609551,15609976-15610044,15610158-15610847,
           15611112-15611629,15611725-15611789,15613010-15613089,
           15613894-15613998,15614768-15614881,15615029-15615168,
           15615257-15615385,15615903-15616055,15616186-15616327
          Length = 899

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 691 TVLHVEACPTLHLFNIVKAQPSTAISCVAAKKFNNRKDTVSIVIE 557
           T + VE CPT  L+     Q    ISC  +  +NN ++ + + I+
Sbjct: 199 TSITVEGCPTSALWGPYCNQTIEMISCSQSSGYNNSRNLMGLNID 243


>11_06_0117 + 20302795-20304816
          Length = 673

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 462 TWLVPVQYLIGIVMIIVSY-CVTDWLGIDGEPPSMTILTVS 581
           +WL  +Q+L  + +  V+   ++DW  +  + PS+T+L++S
Sbjct: 190 SWLTRLQWLKYLYLSSVNLSAISDWAHVVNKIPSLTVLSLS 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,872,234
Number of Sequences: 37544
Number of extensions: 373816
Number of successful extensions: 813
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)