Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c18
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33706| Best HMM Match : No HMM Matches (HMM E-Value=.)             144   7e-35
SB_57726| Best HMM Match : YiaAB (HMM E-Value=0.56)                    39   0.005
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)                   31   0.98 
SB_58676| Best HMM Match : FUN14 (HMM E-Value=0.16)                    28   9.1  
SB_15712| Best HMM Match : Cadherin (HMM E-Value=0)                    28   9.1  

>SB_33706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score =  144 bits (349), Expect = 7e-35
 Identities = 93/186 (50%), Positives = 116/186 (62%), Gaps = 5/186 (2%)
 Frame = +3

Query: 177 NSPENEELIE-NG--DAPNEGRSNI--KGDELNIAVLLFLYTLQGIPLGLAGAVPMLLQN 341
           N+   E + E NG    P E R  +    D  +I VLLFLY LQGIPLGLAG++P+LL  
Sbjct: 27  NNTRQEVMTEVNGKQQKPKEHRKPLIPPDDRWSIGVLLFLYVLQGIPLGLAGSIPLLLAK 86

Query: 342 KGITYTQQAEFSLVNWPFSVKLLWAPIVDAMFWPEFGRRKTWLVPVQYLIGIVMIIVSYC 521
           K + Y QQA FS V WP+SVKLLWAPIVDA F+  FGRRKTWLVPVQYLIGI M+I+S  
Sbjct: 87  K-VGYKQQAMFSFVYWPYSVKLLWAPIVDAAFFSRFGRRKTWLVPVQYLIGIFMLILS-- 143

Query: 522 VTDWLGIDGEPPSMTILTVSFLLLNFLAATQDIAVDGWALTMLKRCNVGHASTCNTVGQT 701
             + + +DG   ++T+L           + +++   GW            ASTCNTVGQT
Sbjct: 144 --NDIAVDGW--ALTML-----------SRENV---GW------------ASTCNTVGQT 173

Query: 702 AGFFLG 719
           AG+FLG
Sbjct: 174 AGYFLG 179


>SB_57726| Best HMM Match : YiaAB (HMM E-Value=0.56)
          Length = 400

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 23/68 (33%), Positives = 36/68 (52%)
 Frame = +3

Query: 516 YCVTDWLGIDGEPPSMTILTVSFLLLNFLAATQDIAVDGWALTMLKRCNVGHASTCNTVG 695
           + V  +LG+D    + +++  + L LN +AA QDIAVD  A+ +LK   +G  +    VG
Sbjct: 5   FVVPAFLGVD----NTSVVVGAVLGLNAMAALQDIAVDAMAIKVLKSSELGLGNIAQVVG 60

Query: 696 QTAGFFLG 719
              G   G
Sbjct: 61  YKLGALAG 68


>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
          Length = 3037

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +3

Query: 135  KAIRAAIMTLTKRKNSPENEELIENGDAPNEGRSNIKGDE 254
            K I  AI  +TKRK + E +EL+    A +E +++ KG++
Sbjct: 2964 KEIDEAIEIVTKRKENDEIQELLRPSSARSESKASKKGEK 3003


>SB_58676| Best HMM Match : FUN14 (HMM E-Value=0.16)
          Length = 217

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +3

Query: 606 ATQDIAVDGWALTMLK---RCNVGHASTCNTVGQTAGF 710
           A+  I+  G+ + ML    RC       CNTVG TAGF
Sbjct: 29  ASTSISYAGYTVNMLDIAPRCAGVIMGICNTVGTTAGF 66


>SB_15712| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1075

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 643 VKAQPSTAISCVAAKKFNNRKDTVSIV--IEGGSPSIPSQSVTQYD 512
           +K   S AIS      +N R + + +V   +GGSP++ S+++   D
Sbjct: 511 IKDWSSGAISLAGMLSYNQRNNYIVVVNVTDGGSPALKSRAIVVID 556


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,473,004
Number of Sequences: 59808
Number of extensions: 455392
Number of successful extensions: 1089
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)