Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c16
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    30   0.36 
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    29   0.63 
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.5  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    26   5.9  

>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 297 NIIQTIIESITNALPIKLSRRTTPPK-KESPMKIETLQKFAPELVPKNTVE 446
           + +Q I+E + +A PIK  R+T  P+ + +  + E  +    + V KNTV+
Sbjct: 93  DFLQDIVEKVPDAPPIKAERKTKRPRARRAANEGEHNESVPAKKVKKNTVK 143


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
 Frame = +3

Query: 369 PKKESPMK---IETLQKFAPELVPKNTVEIVSIPNQVLEIVEAEKAVDNVISMTEVSVTE 539
           PKKE+ +    +  LQ+ +   + K   EI+ I    LE+V+ + ++ N+I+ T+V VT 
Sbjct: 283 PKKENIIPKYYLRYLQRLSRTEINK---EIIEIEKLELEVVQFQMSIANLIN-TQVEVTN 338

Query: 540 TI 545
           TI
Sbjct: 339 TI 340


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +3

Query: 543 IAKNSSFKIPKMPLVNSEVLKNAIEKRKKSL--MKDASMNTN 662
           + K +SF+ P + +  + VL+ ++EKRK ++  +KD  M  N
Sbjct: 21  LMKRNSFRRPLLNMRCNSVLQYSLEKRKLTVQDLKDTRMELN 62


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 317 RKYHKRVTHKVIKKD 361
           R YHK V+HK+++ D
Sbjct: 306 RSYHKEVSHKIVRID 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,763
Number of Sequences: 5004
Number of extensions: 43557
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)