Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c16
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0125 - 946480-947242,947283-947374,947462-947680,948059-94...    30   2.0  
11_06_0241 + 21645158-21645433,21645908-21646108                       29   3.5  
08_01_0941 - 9301603-9301788,9301866-9301958,9302060-9302120,930...    28   6.0  
12_02_0510 + 19846834-19848100,19848114-19848391                       28   8.0  
12_02_0506 - 19794383-19794670,19795066-19795140,19795337-197987...    28   8.0  
04_04_1021 + 30190403-30190450,30191245-30192924                       28   8.0  

>12_01_0125 -
           946480-947242,947283-947374,947462-947680,948059-949156
          Length = 723

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +3

Query: 396 ETLQ-KFAPELVPKNTVEIVSIPNQVLEIVEAEKAVDNVISMTEVSVTETIAKNSSFKIP 572
           +TL+ K   E +  N  E  S  N V   VEA  A D  +        E++++      P
Sbjct: 512 DTLKWKKIAESISTNRTETASWENSVTHWVEAALATDLEVLKLMNKAPESLSRKRGADKP 571

Query: 573 KMPLVNSEVLKNAIEKRK 626
           K PLV  E  +  I KR+
Sbjct: 572 KAPLV-VEAPRTTISKRQ 588


>11_06_0241 + 21645158-21645433,21645908-21646108
          Length = 158

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 104 AQGAFFSTFDNGKTFPWQRK 163
           A GAF ST+D GK F W+ K
Sbjct: 50  ATGAFCSTWDAGKPFDWRSK 69


>08_01_0941 -
           9301603-9301788,9301866-9301958,9302060-9302120,
           9302397-9302648,9302903-9303720,9303993-9304490
          Length = 635

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = +3

Query: 348 LSRRTTPPKKESPMKIETLQKFAPELVPKNTVEIVSIPNQVLEIVEAEKAVDNVISMTEV 527
           L +   PPKK+   K E  +     LVP+   EI  +P   +EI   +  ++  ++  EV
Sbjct: 249 LGKPPRPPKKKVTDKAEEPEMHKENLVPEVPPEI-EVPEVPMEIAVPDVQMEIKVTEPEV 307

Query: 528 SVTETI 545
            V  ++
Sbjct: 308 QVVASV 313


>12_02_0510 + 19846834-19848100,19848114-19848391
          Length = 514

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = +3

Query: 477 IVEAEKAVDNVISMTEVSVTETIAKNSSFKIPKMPLVNSEVLKNAIEKRKKSLMKDASMN 656
           I EAE A+D +       V    A++SS  +PK   +   V  N     +K+L K+A M 
Sbjct: 84  IQEAEDALDELDFFDLEKVCNRKAESSSSLVPKFMRLQLSVSSNNSNSSRKNL-KNALMR 142

Query: 657 TNTDHDIAA 683
             +  D AA
Sbjct: 143 LESVFDDAA 151


>12_02_0506 -
           19794383-19794670,19795066-19795140,19795337-19798704,
           19799503-19799671,19799758-19799850
          Length = 1330

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = +3

Query: 477 IVEAEKAVDNVISMTEVSVTETIAKNSSFKIPKMPLVNSEVLKNAIEKRKKSLMKDASMN 656
           I EAE A+D +       V    A++SS  +PK   +   V  N     +K+L K+A M 
Sbjct: 175 IQEAEDALDELDFFDLEKVCNRKAESSSSLVPKFMRLQLSVSSNNSNSSRKNL-KNALMR 233

Query: 657 TNTDHDIAA 683
             +  D AA
Sbjct: 234 LESVFDDAA 242


>04_04_1021 + 30190403-30190450,30191245-30192924
          Length = 575

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = -1

Query: 448 ISTVFFGTNSGANFCNVSIFIGDSFLG---GVVLLDNFMGNAFVILSIIVWMM 299
           + TV  G+ S A+  NV+ + G S+L    G ++ D F GN   IL  +V+ +
Sbjct: 68  LETVLHGS-SLASASNVTTWFGTSYLTPVFGAIIADTFFGNYNTILVSLVFYL 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,195,168
Number of Sequences: 37544
Number of extensions: 234369
Number of successful extensions: 574
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)