Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10c16
(688 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot... 30 1.3
At5g40450.1 68418.m04905 expressed protein 30 1.7
At1g22470.1 68414.m02808 expressed protein 29 2.2
At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2) id... 29 2.2
At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator... 29 2.9
At1g14280.1 68414.m01693 phytochrome kinase, putative contains s... 29 2.9
At4g20160.1 68417.m02949 expressed protein ; expression supporte... 29 3.8
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 29 3.8
At1g20290.1 68414.m02533 hypothetical protein 29 3.8
At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF038... 27 8.8
At1g53050.1 68414.m06007 protein kinase family protein contains ... 27 8.8
>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487; contains
prenyl group binding site (CAAX box) Prosite:PS00294
Length = 769
Score = 30.3 bits (65), Expect = 1.3
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Frame = +3
Query: 378 ESPM-KIETLQKFAPELVPKNTVEIVSIPNQVLEI-VEAEKAVDNVISMTEVSVTETIAK 551
E P+ +E ++F P L P+ +++ + I +++ KAVD S+TE S T+T+
Sbjct: 109 EKPVVPVEKKEEFVPRL-PERKPVFLNVYRKTKGIRIKSSKAVDGSSSVTEKSATDTVKV 167
Query: 552 NS---SFKIPKMPLVNSEVLKNAIEKRKKSLMKD 644
K K NS+ K E SL K+
Sbjct: 168 QDVVVGQKDTKTSEENSQASKKEAEIATISLQKE 201
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 459 PNQVLEIVEAEKAVDNVISMTEVSVTETIAKNSSFKIPKMPLVNSE 596
P QV EI+E E + + ++ TET+ K S + P L + E
Sbjct: 2083 PKQVEEILEEETKETHKVQAEDIFSTETVPKESFIEAPVSMLASGE 2128
>At1g22470.1 68414.m02808 expressed protein
Length = 146
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = -1
Query: 595 SLLTNGILGILKEEFFAIVSVTETSVIEITLSTAFSASTISKT*FGIETISTVFFGTNS 419
SL N L L EF+ S +S + T+S+ SAS+ S++ F IS+ + +S
Sbjct: 55 SLCLNESLSKLSSEFYDYSSSMSSSSLAKTMSSCSSASSESESDFSSTAISSYYSSVSS 113
>At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2)
identical to GI:11993463
Length = 961
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 333 ALPIKLSRRTTPPKKESPMKIETLQKFAPELVPKNTVEIVSIPNQVLEIVEAE 491
+LP+ + +PPKK P+ K P+ VPKN ++ + + +V +E
Sbjct: 382 SLPVPFKK--SPPKKPQPVSRAKKAKLPPKRVPKNVSKVSKVSKVLPGMVLSE 432
>At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator of
chromosome condensation (RCC1) family protein identical
to zinc finger protein PRAF1 [Arabidopsis thaliana]
gi|15811367|gb|AAL08940.
Length = 1103
Score = 29.1 bits (62), Expect = 2.9
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Frame = +3
Query: 351 SRRTTPPKKESPMKIETLQKFAPELVPKNTVEIVSIPNQVLEIVEAEKAVDNVISMTEVS 530
SRR++PP+ +PM T + P + N + I NQ EIV+ VD++ E
Sbjct: 803 SRRSSPPRSATPMP-STSGLYFPVGIADNMKKTNEILNQ--EIVKLRTQVDSLTQKCEFQ 859
Query: 531 VTETIAKNSSFKIPK-MPLVNSEVLKN-AIEKRKKSLM 638
E +NS K + + L E K+ A ++ KSL+
Sbjct: 860 EVE--LQNSVKKTQEALALAEEESAKSRAAKEAIKSLI 895
>At1g14280.1 68414.m01693 phytochrome kinase, putative contains
similarity to Swiss-Prot:Q9SWI1 phytochrome kinase
substrate 1 [Arabidopsis thaliana]
Length = 442
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 513 SMTEVSVTETIAKNSSFKIPKMPLVNSEVLKNAIEKRKKS 632
S+ T + KN SF+IP++P++ + A ++RK S
Sbjct: 339 SVMSECATSPVKKNRSFQIPRIPIMAKSNREIAPQRRKSS 378
>At4g20160.1 68417.m02949 expressed protein ; expression supported
by MPSS
Length = 1188
Score = 28.7 bits (61), Expect = 3.8
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Frame = +3
Query: 402 LQKFAPELVPKNTVEIVSIPNQVLEIVEAEKAVDNVISMTEVSVTETIAKNSSFKIPKMP 581
L+K A E + K TVE + E V ++++++ E + + IAK S + +
Sbjct: 424 LKKLAGETIQKETVEGKGEKRETKEKVISKESLEGKGEKRESTKEKAIAKESVAEKALVG 483
Query: 582 LVNSEVLKNAIEK--RKKSLMKDASM-NTNTD 668
+ L N+ EK R+K + K + NTNT+
Sbjct: 484 IAEKVNLWNSDEKMNRRKVVEKGKTEGNTNTE 515
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = +3
Query: 333 ALPIKLSRRTTP--PKKESPMKIETLQKFAPELVPKNTVEIVSIPNQVLEIV-EAEKAVD 503
A+ K ++++P PKK + P TV + +PNQ +E+V AE
Sbjct: 815 AVEAKEEKKSSPKVPKKVKNQLVYEQDDVHPHGFKAKTVLVPDVPNQQIEVVIRAENVSY 874
Query: 504 NVISMTEVSVTE 539
N + M + S E
Sbjct: 875 NPLDMVDPSKVE 886
>At1g20290.1 68414.m02533 hypothetical protein
Length = 382
Score = 28.7 bits (61), Expect = 3.8
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +3
Query: 411 FAPELVPKNTVEIVSIPNQVLEIVEAEKAVDNVIS-MTEVSVT-ETIAKNSSFKIPKMPL 584
F+PE V + I S +Q + ++ A D+ I+ +T +S T ETI+ + PK
Sbjct: 210 FSPETVTEQARLIPSSFHQEVPDMKLLLAADDKINRLTLISGTKETISVYTLVGNPKWTF 269
Query: 585 VNSEVLKNAIEKRKKSLMKDASM 653
+E K A++KR K++ + SM
Sbjct: 270 RKNENPKWALDKRIKNVSMEGSM 292
>At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF03800:
Nuf2 family domain; similar to Myosin-like protein NUF2
(Nuclear filament-containing protein 2) (Nuclear
division protein nuf2) (Swiss-Prot:Q10173)
[Schizosaccharomyces pombe]
Length = 974
Score = 27.5 bits (58), Expect = 8.8
Identities = 24/90 (26%), Positives = 44/90 (48%)
Frame = +3
Query: 357 RTTPPKKESPMKIETLQKFAPELVPKNTVEIVSIPNQVLEIVEAEKAVDNVISMTEVSVT 536
R P +E IE L K EL N ++ S+ ++ E +DN IS E +
Sbjct: 176 RDLPFVQELEANIEQLNKKILEL---NNQQM-SLRATFQKMREKSTQMDNEISKAEFDLV 231
Query: 537 ETIAKNSSFKIPKMPLVNSEVLKNAIEKRK 626
ET+ +N++ + + + + L+ A+E++K
Sbjct: 232 ETVQENANLR--SQIVQSPDKLQGALEEKK 259
>At1g53050.1 68414.m06007 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 694
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 345 KLSRRTTPPKKESPMKI-ETLQKFAPELVPKNTVEIVSIPNQVLEIVEAEKAVDNVISMT 521
++SR ++E P++I E + V N VS+ + + EK ++NV + +
Sbjct: 31 RVSRPVASSRREEPLRIKERSDVVSVRPVLSNKQSNVSLHLRGENLSRREKRIENVAATS 90
Query: 522 EVSVTETIAK 551
++++ TIAK
Sbjct: 91 PLAMSITIAK 100
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,114,507
Number of Sequences: 28952
Number of extensions: 213071
Number of successful extensions: 629
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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