Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10c15
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|... 100 4e-22
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 38 0.002
SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo... 29 0.53
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 0.92
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 27 2.8
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 26 4.9
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 26 6.5
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 6.5
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S... 25 8.6
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 25 8.6
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 8.6
>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 99.5 bits (237), Expect = 4e-22
Identities = 55/140 (39%), Positives = 81/140 (57%)
Frame = +2
Query: 95 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 274
SGV VS C ++E+K K RYVVF + D K V + +++ FL DL +
Sbjct: 4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPEK--- 60
Query: 275 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 454
+CRY ++DFE+ + +G + K+ +SW PD A +K KM+YSSS D L+++ G+
Sbjct: 61 DCRYAIYDFEF-NLGEGV-----RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIG 114
Query: 455 KYIQATDLSEASQEAVEEKL 514
IQATD SE + E V EK+
Sbjct: 115 TDIQATDFSEVAYETVLEKV 134
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 37.9 bits (84), Expect = 0.002
Identities = 28/86 (32%), Positives = 44/86 (51%)
Frame = +2
Query: 161 RYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDFEYTHQCQGTSEAS 340
R + I +E DV+T+ E++ E D +K EC G + + + S
Sbjct: 26 RAAIISISNENSFDVKTMVEKSESIES---DFKK--VRECLLGSEEPAFVL----VYDDS 76
Query: 341 KKQKLFLMSWCPDTAKVKKKMLYSSS 418
KK L L+S+ P+ A V++KMLY+SS
Sbjct: 77 KKNLLQLISYVPENANVRRKMLYASS 102
Score = 28.7 bits (61), Expect = 0.92
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = +2
Query: 350 KLFLMSWCPDTAKVKKKMLYSSS----FDALKKSL-VGVQKYIQATDLSEASQEAV 502
K+ + CP A VK +M+YSSS D++K L + + I++ D ++ +++ +
Sbjct: 244 KILFIYICPMQATVKHRMVYSSSKLGLLDSIKAELGIVIDGKIESNDAADITEKEI 299
>SPAC17H9.11 |||cofilin/tropomyosin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 141
Score = 29.5 bits (63), Expect = 0.53
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +2
Query: 326 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 505
T++ LF++ W P M+Y+S+ + + V K +A D + + EAV+
Sbjct: 79 TTDGRLSTPLFMIYWRPSATPNDLSMIYASA-KVWFQDVSQVHKVFEARDSEDITSEAVD 137
Query: 506 EKL 514
E L
Sbjct: 138 EFL 140
>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 314
Score = 28.7 bits (61), Expect = 0.92
Identities = 37/174 (21%), Positives = 67/174 (38%), Gaps = 3/174 (1%)
Frame = +2
Query: 68 LRE*HQKMASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGE-RNAEYEQF 244
LR ++ G D+ ++ +E ++KK + F RD++++ ++ R
Sbjct: 41 LRSEGSELIFGGRSFDSLLSSIKETMEEKKKKSSSFEKRDKRRVQLKEKSPLRTPRNRTQ 100
Query: 245 LEDLQ--KGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSS 418
+ D + + T +F+ Q T A+K + P T K + ++
Sbjct: 101 IIDARSTRKDTENESLRKNNFKRRTQFAFTGRATKSNAGVMDVQSPSTMSTSKNNVRNAE 160
Query: 419 FDALKKSLVGVQKYIQATDLSEASQEAVEEKLRATDRQ*TAFTHELATKPNPLS 580
A KK + G +KY + S + E K R DR + FT LS
Sbjct: 161 RPASKKPVFGSKKYFDVINDSNVENKE-ETKDRNLDRALSKFTQSREKNEQNLS 213
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 416 SFDALKKSLVGVQKYIQATDLSEASQ 493
S +AL++ L G + Y+Q+TD++ S+
Sbjct: 188 SLEALQEELEGFEDYVQSTDIAAMSK 213
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 26.2 bits (55), Expect = 4.9
Identities = 26/136 (19%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Frame = +2
Query: 122 KTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDF 301
K + + ++ + K ++ +D K+ D + + + EY F ++L+ TG+ Y DF
Sbjct: 108 KCSSDFLEANVKSQFTTCENKDSKE-DYQILHNKRLEYVSFNDELKSLETGQPLYCFQDF 166
Query: 302 EYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLS 481
+ + G S+K ++ A V K ++ +K++ K ++ +
Sbjct: 167 Q--KKVHGPPALSEKPGKCILK-DKTNAHVNKIPQDEVNYSLPQKNITIFSKELKENEFE 223
Query: 482 EASQ-EAVEEKLRATD 526
++ E EEK + ++
Sbjct: 224 SINEGETEEEKAKTSN 239
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 25.8 bits (54), Expect = 6.5
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +1
Query: 478 LGSVSGGRRREAPRHRSPINSIYTRARDE---TEPALRHSCPDDTRPRHH*PLSIITKEN 648
LG G ++ E+ R + P S + EP +RHS RP+ H S +T+++
Sbjct: 20 LGEEDGRQKGESSRKKRPPLSRKNPSNVSFWSNEPIIRHSSVKTDRPQFHRADSTVTEQS 79
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = -3
Query: 369 HDIRKSFCFLLASDVPWHWCVYSKSNRPY-----LHSPVPPFCR 253
HD+ +++ S +H C ++S P+ LH+P+P C+
Sbjct: 107 HDVASHPSYMVQSPTSYHACSNNQSPFPHSHHPPLHNPLPVSCQ 150
>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 28 CRCRGVGEVSGVIFT*ITSKNGV 96
CRC G+ ++SG I + SKNG+
Sbjct: 330 CRCAGIKDISGEI---LGSKNGM 349
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 8.6
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Frame = -3
Query: 585 VSESGFGFVASSCVNAVYWRSVARSFSSTAS*DASERSVAWMYF*TPTR---DFFRASNE 415
+ E +G ++ SCV+ YW + + A +R + + + P++ R N
Sbjct: 56 LEEEQWGVLSGSCVDGTYWSAEEKELFFQAVARNGKRDLDLIAYSIPSKSAVQIERYINA 115
Query: 414 LEYNIFFLTLAVSGHHDIR-KSFCFLLASDVP 322
LE + +L H D +S C L D+P
Sbjct: 116 LENELRWL----RNHVDASVRSQCLLKYEDIP 143
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -3
Query: 321 WHWCVYSKSNRPY--LHSPVPPFCRSSRNCSYSALRSPTVSTSICF 190
W++ Y+ S R Y VPP+CR +R+ + CF
Sbjct: 122 WNFVDYALSLRKYGWTDDVVPPYCRKVLTYKSLGIRTAVYVGAFCF 167
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,500
Number of Sequences: 5004
Number of extensions: 51723
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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