Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10c15
(743 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4) id... 116 2e-26
At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1) id... 112 3e-25
At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4) id... 110 1e-24
At4g00680.1 68417.m00093 actin-depolymerizing factor, putative s... 109 3e-24
At1g01750.1 68414.m00094 actin-depolymerizing factor, putative s... 109 3e-24
At5g52360.1 68418.m06497 actin-depolymerizing factor, putative s... 107 8e-24
At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6) id... 106 1e-23
At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3) id... 105 2e-23
At3g46000.1 68416.m04977 actin-depolymerizing factor, putative (... 104 5e-23
At4g25590.1 68417.m03687 actin-depolymerizing factor, putative s... 101 4e-22
At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5) id... 95 4e-20
At4g34970.1 68417.m04957 actin-depolymerizing factor, putative s... 89 3e-18
At3g45990.1 68416.m04976 actin-depolymerizing factor, putative s... 88 7e-18
At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3) id... 74 1e-13
At3g03290.1 68416.m00326 universal stress protein (USP) family p... 31 0.61
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 29 4.3
At3g01560.1 68416.m00086 proline-rich family protein contains pr... 29 4.3
At5g63320.1 68418.m07946 expressed protein 28 7.5
At5g28810.1 68418.m03542 hypothetical protein 27 9.9
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)... 27 9.9
At3g43920.1 68416.m04701 ribonuclease III family protein similar... 27 9.9
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa... 27 9.9
At2g23190.1 68415.m02770 cytochrome P450, putative Similar to C... 27 9.9
At1g64430.1 68414.m07302 expressed protein 27 9.9
>At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 139
Score = 116 bits (278), Expect = 2e-26
Identities = 57/142 (40%), Positives = 88/142 (61%), Gaps = 1/142 (0%)
Frame = +2
Query: 92 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 268
ASG+ V D CK + E+K + HR++V+ I + +KQ+ VE VGE YE F L
Sbjct: 5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP--- 61
Query: 269 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVG 448
ECRY ++DF++ T+E +K K+F ++WCPD AKV+ KM+Y+SS D K+ L G
Sbjct: 62 ADECRYAIYDFDFV-----TAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDG 116
Query: 449 VQKYIQATDLSEASQEAVEEKL 514
+Q +QATD +E + ++ ++
Sbjct: 117 IQVELQATDPTEMDLDVLKSRV 138
>At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1)
identical to SP|Q39250 Actin-depolymerizing factor 1
(ADF-1) (AtADF1) {Arabidopsis thaliana}
Length = 139
Score = 112 bits (269), Expect = 3e-25
Identities = 56/132 (42%), Positives = 84/132 (63%), Gaps = 1/132 (0%)
Frame = +2
Query: 92 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 268
ASG+ V D CK + E+K + HR++V+ I + +KQ+ VE VG+ YE+F L
Sbjct: 5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLP--- 61
Query: 269 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVG 448
ECRY ++DF++ T+E +K K+F ++WCPD AKV+ KM+Y+SS D K+ L G
Sbjct: 62 ADECRYAIYDFDFV-----TAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDG 116
Query: 449 VQKYIQATDLSE 484
+Q +QATD +E
Sbjct: 117 IQVELQATDPTE 128
>At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 132
Score = 110 bits (264), Expect = 1e-24
Identities = 54/139 (38%), Positives = 85/139 (61%), Gaps = 1/139 (0%)
Frame = +2
Query: 101 VTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGGTGE 277
+ V D CK + E+K + HR++V+ I + +KQ+ VE VGE YE F L E
Sbjct: 1 MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP---ADE 57
Query: 278 CRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK 457
CRY ++DF++ T+E +K K+F ++WCPD AKV+ KM+Y+SS D K+ L G+Q
Sbjct: 58 CRYAIYDFDFV-----TAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQV 112
Query: 458 YIQATDLSEASQEAVEEKL 514
+QATD +E + ++ ++
Sbjct: 113 ELQATDPTEMDLDVLKSRV 131
>At4g00680.1 68417.m00093 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 109 bits (261), Expect = 3e-24
Identities = 55/143 (38%), Positives = 89/143 (62%), Gaps = 2/143 (1%)
Frame = +2
Query: 92 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDLQKG 265
ASG+ V+D CK + E+K + +R++VF I DEK Q+ +E +G Y+ F +
Sbjct: 5 ASGMHVNDECKIKFLELKAKRTYRFIVFKI-DEKAQQVQIEKLGNPEETYDDFTSSIPDD 63
Query: 266 GTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLV 445
ECRY ++DF++T T + +K K+F ++W PDT++V+ KMLY+SS D K+ +
Sbjct: 64 ---ECRYAVYDFDFT-----TEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREME 115
Query: 446 GVQKYIQATDLSEASQEAVEEKL 514
G+Q +QATD SE S + ++ +L
Sbjct: 116 GIQVELQATDPSEMSLDIIKGRL 138
>At1g01750.1 68414.m00094 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 109 bits (261), Expect = 3e-24
Identities = 56/143 (39%), Positives = 90/143 (62%), Gaps = 2/143 (1%)
Frame = +2
Query: 92 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDLQKG 265
ASG+ VSD CK + E+K + +R++VF I DEK Q+ ++ +G YE F + +
Sbjct: 5 ASGMHVSDECKLKFLELKAKRNYRFIVFKI-DEKAQQVMIDKLGNPEETYEDFTRSIPED 63
Query: 266 GTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLV 445
ECRY ++D+++T T E +K K+F ++W PDT++V+ KMLY+SS D K+ L
Sbjct: 64 ---ECRYAVYDYDFT-----TPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELD 115
Query: 446 GVQKYIQATDLSEASQEAVEEKL 514
G+Q +QATD SE S + ++ ++
Sbjct: 116 GIQVELQATDPSEMSLDIIKGRV 138
>At5g52360.1 68418.m06497 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 107 bits (257), Expect = 8e-24
Identities = 53/140 (37%), Positives = 87/140 (62%)
Frame = +2
Query: 92 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGT 271
ASG+ V D CK + E+K + +R+++F I D +Q+ VE +G Y+ F L
Sbjct: 5 ASGMAVEDECKLKFLELKAKRNYRFIIFRI-DGQQVVVEKLGSPQENYDDFTNYLPPN-- 61
Query: 272 GECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGV 451
ECRY ++DF++T T+E +K K+F ++W PD+++V+ KM+Y+SS D K+ L G+
Sbjct: 62 -ECRYAVYDFDFT-----TAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGI 115
Query: 452 QKYIQATDLSEASQEAVEEK 511
Q +QATD SE S + ++ +
Sbjct: 116 QVELQATDPSEMSLDIIKSR 135
>At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6)
identical to SP|Q9ZSK2 Actin-depolymerizing factor 6
(ADF-6) (AtADF6) {Arabidopsis thaliana}
Length = 146
Score = 106 bits (255), Expect = 1e-23
Identities = 55/140 (39%), Positives = 84/140 (60%), Gaps = 1/140 (0%)
Frame = +2
Query: 95 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGGT 271
SG+ V+D KTT+ E+++ K HRYVVF I + +K++ VE G Y+ FL L
Sbjct: 13 SGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDN-- 70
Query: 272 GECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGV 451
+CRY ++DF++ TSE +K K+F +W P T+ ++ K+LYS+S D L + L G+
Sbjct: 71 -DCRYAVYDFDFV-----TSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGI 124
Query: 452 QKYIQATDLSEASQEAVEEK 511
IQATD +E E + E+
Sbjct: 125 HYEIQATDPTEVDLEVLRER 144
>At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 139
Score = 105 bits (253), Expect = 2e-23
Identities = 51/141 (36%), Positives = 84/141 (59%), Gaps = 1/141 (0%)
Frame = +2
Query: 92 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 268
ASG+ V D CK + E+K + HR++++ I + +KQ+ VE +GE +E L
Sbjct: 5 ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLP--- 61
Query: 269 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVG 448
ECRY +FDF++ +SE + ++F ++W PDTA+V+ KM+Y+SS D K+ L G
Sbjct: 62 ADECRYAIFDFDFV-----SSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDG 116
Query: 449 VQKYIQATDLSEASQEAVEEK 511
+Q +QATD +E + + +
Sbjct: 117 IQVELQATDPTEMDLDVFKSR 137
>At3g46000.1 68416.m04977 actin-depolymerizing factor, putative
(ADF2) strong similarity to SP|Q9ZSK3
Actin-depolymerizing factor 4 (ADF-4) (AtADF4)
{Arabidopsis thaliana}; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 104 bits (250), Expect = 5e-23
Identities = 54/140 (38%), Positives = 83/140 (59%)
Frame = +2
Query: 92 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGT 271
ASG+ V D CK + E+K + R +V+ I D KQ+ VE +GE Y+ F L
Sbjct: 5 ASGMAVHDDCKLKFMELKAKRTFRTIVYKIED-KQVIVEKLGEPEQSYDDFAASLP---A 60
Query: 272 GECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGV 451
+CRY ++DF++ T+E +K K+F ++W PDTAKV+ KM+Y+SS D K+ L G+
Sbjct: 61 DDCRYCIYDFDFV-----TAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGI 115
Query: 452 QKYIQATDLSEASQEAVEEK 511
Q +QATD +E + + +
Sbjct: 116 QVELQATDPTEMGLDVFKSR 135
>At4g25590.1 68417.m03687 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 130
Score = 101 bits (243), Expect = 4e-22
Identities = 50/137 (36%), Positives = 83/137 (60%)
Frame = +2
Query: 101 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGEC 280
+ V D CK + E+K + +R+++F I D +Q+ VE +G + Y+ F L EC
Sbjct: 1 MAVEDECKLKFLELKSKRNYRFIIFRI-DGQQVVVEKLGNPDETYDDFTASLP---ANEC 56
Query: 281 RYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKY 460
RY +FDF++ T E +K K+F ++W PD+++V+ KM+Y+SS D K+ L G+Q
Sbjct: 57 RYAVFDFDFI-----TDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVE 111
Query: 461 IQATDLSEASQEAVEEK 511
+QATD SE S + ++ +
Sbjct: 112 LQATDPSEMSFDIIKSR 128
>At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5)
identical to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}
Length = 143
Score = 95.1 bits (226), Expect = 4e-20
Identities = 46/146 (31%), Positives = 89/146 (60%), Gaps = 2/146 (1%)
Frame = +2
Query: 86 KMAS-GVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQ 259
KMA+ G+ V+D C +++ ++K K HRY+VF I ++ +++ V+ VG Y + L
Sbjct: 6 KMATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLP 65
Query: 260 KGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 439
+CRY +FDF++ T + +K K+F ++W P+ +K++ K+LY++S D L++
Sbjct: 66 ---VDDCRYAVFDFDFV-----TVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRV 117
Query: 440 LVGVQKYIQATDLSEASQEAVEEKLR 517
L G+ +QATD +E + ++++ +
Sbjct: 118 LEGIHYELQATDPTEMGFDIIQDRAK 143
>At4g34970.1 68417.m04957 actin-depolymerizing factor, putative
similar to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 130
Score = 89.0 bits (211), Expect = 3e-18
Identities = 41/138 (29%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Frame = +2
Query: 107 VSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGGTGECR 283
++D CK ++ E+K K HRYVV+ + ++ +++ V+ VG Y+ L + +CR
Sbjct: 1 MTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPED---DCR 57
Query: 284 YGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYI 463
Y +FDF+Y T + + K+F ++W P+ +++++KM+Y++S L++ L GV +
Sbjct: 58 YAVFDFDYV-----TVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYEL 112
Query: 464 QATDLSEASQEAVEEKLR 517
QATD +E + ++++ +
Sbjct: 113 QATDPTEMGFDKIQDRAK 130
>At3g45990.1 68416.m04976 actin-depolymerizing factor, putative
similar to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 133
Score = 87.8 bits (208), Expect = 7e-18
Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 6/144 (4%)
Frame = +2
Query: 101 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETV------GERNAEYEQFLEDLQK 262
+ + D CK T+ E+K+ + R +V+ I D Q+ VE GER YE+F L
Sbjct: 1 MVLHDDCKLTFLELKERRTFRSIVYKIEDNMQVIVEKHHYKKMHGEREQSYEEFANSLP- 59
Query: 263 GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL 442
ECRY + D E+ ++K+ ++W P TAK++KKM+YSS+ D K+ L
Sbjct: 60 --ADECRYAILDIEFV---------PGERKICFIAWSPSTAKMRKKMIYSSTKDRFKREL 108
Query: 443 VGVQKYIQATDLSEASQEAVEEKL 514
G+Q ATDL++ S +A+ ++
Sbjct: 109 DGIQVEFHATDLTDISLDAIRRRI 132
>At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 124
Score = 73.7 bits (173), Expect = 1e-13
Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 1/141 (0%)
Frame = +2
Query: 92 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 268
ASG+ V D CK + E+K + HR++++ I + +KQ+ VE +GE +E L
Sbjct: 5 ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLP--- 61
Query: 269 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVG 448
ECRY +FDF++ +SE + ++F ++W PDTA+ + L G
Sbjct: 62 ADECRYAIFDFDFV-----SSEGVPRSRIFFVAWSPDTAR---------------RELDG 101
Query: 449 VQKYIQATDLSEASQEAVEEK 511
+Q +QATD +E + + +
Sbjct: 102 IQVELQATDPTEMDLDVFKSR 122
>At3g03290.1 68416.m00326 universal stress protein (USP) family
protein contains Pfam profile: PF00582 universal stress
protein family
Length = 274
Score = 31.5 bits (68), Expect = 0.61
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 206 ETVGERNAEYEQFLEDLQKGGTGE 277
ET G+ +EYE+F E+ ++GG GE
Sbjct: 45 ETDGDSTSEYEEFEEEKERGGEGE 68
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 475 PLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPDDTRP 609
PL + SG + SP N TRA D T PA+ D+ +P
Sbjct: 307 PLATSSGPSGPNSVPGNSPSNIFLTRAGDRTSPAVDGMDVDEAQP 351
>At3g01560.1 68416.m00086 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 511
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 727 AGGGGTYPRGLTRGPTTSKINHINTIRFP 641
+GGG + PR +R P I+ + T+ FP
Sbjct: 441 SGGGSSSPRSESRAPIDDVIDRVTTMGFP 469
>At5g63320.1 68418.m07946 expressed protein
Length = 569
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 376 GHRQG*EEDVVL*LVRRSEKVPCRSSEVHPSDRPLGSVSGGRR--REAPRHRSPINSIYT 549
G ++ E +VV + +E V EVHP DR G R RE PR S+
Sbjct: 311 GDKEEQETEVVDMRKQENEVVDMGVEEVHPLDRSEGRTLSPHRKEREDPRASGNEESVSE 370
Query: 550 RARD 561
+A+D
Sbjct: 371 KAQD 374
>At5g28810.1 68418.m03542 hypothetical protein
Length = 560
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 588 GVSES-GFGFVASSCVNAVYWRSVARSFSSTA 496
G+ E+ GFG +CV + WRS + F+ TA
Sbjct: 185 GIGEACGFGKTTLTCVPLLDWRSSRKRFNFTA 216
>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
identical to SP|O65607 DNA mismatch repair protein MSH3
(AtMsh3) {Arabidopsis thaliana}
Length = 1081
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -3
Query: 678 PVKSIILILFVFLCNNTKRLVVSWPRVVRAGVSESGFGFVASSCVNAVYWRSVARSFS 505
PV S + + +V + N+TK+ + P + AG+ E + VN W S +SFS
Sbjct: 679 PVDSKVPMNWVKV-NSTKKTIRYHPPEIVAGLDELALATEHLAIVNRASWDSFLKSFS 735
>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
GI:6102610; contains Pfam profiles PF02170: PAZ domain,
PF00636: RNase3 domain
Length = 1531
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -2
Query: 517 AELLFDGLLRRFREVGRLDVLLNSDKGL--FQ---SVERARVQHLLLNLG 383
+ L FD LRR +E+G+ D LN D +Q S++ + H L NLG
Sbjct: 224 SHLKFDASLRRLQELGK-DSFLNMDNKFETYQKRLSIDYREILHCLDNLG 272
>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
family protein similar to C-terminal zinc-finger
[Glycine max] GI:558543; contains Pfam profile: PF00097
zinc finger, C3HC4 type (RING finger)
Length = 486
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -1
Query: 380 CPGTTTSGRASVSC*PPTCP---GTGACIQSQTGHICIPRYRPSADPR 246
C G + G +S+ P P G A ++G++C PRY ++ R
Sbjct: 217 CNGNRSDGSSSLWSQAPAVPYMHGNIATGSIESGNVCFPRYHETSSSR 264
>At2g23190.1 68415.m02770 cytochrome P450, putative Similar to
Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis thaliana];
Length = 543
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 490 RRFREVGRLDVLLNSDKGLFQSVERARVQHLLLNL 386
R R +G L++ + F SV + ++HLLL L
Sbjct: 171 RNLRRIGTLEIFSSHKLNGFLSVRKDEIRHLLLRL 205
>At1g64430.1 68414.m07302 expressed protein
Length = 559
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 601 CRQGRSVGERVRFRRELVCKCCLLAIGGAE 512
CR G S E V F + + C CL+AI A+
Sbjct: 180 CRVGISPAEEVPFGKIVRCPSCLIAIAVAQ 209
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,837,583
Number of Sequences: 28952
Number of extensions: 296117
Number of successful extensions: 1053
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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