Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c11
         (327 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    25   3.8  
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    24   5.1  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    23   8.8  

>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 121 RSKQRLIFKSIKVFTSAFL*NWYEWFF*SFYVLSLERF 8
           R + +L+     +FTSAF+ NW + F     +LSL  F
Sbjct: 91  RRESKLVSHVCSLFTSAFVFNWPKHF--DIPLLSLPSF 126


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 102 YLKVSKFSLQRFCKIGMNGFFSLFMFCH 19
           YL ++K  + +FCK   + +   F+ CH
Sbjct: 26  YLTLNKLFIDKFCKTQESTYPIHFVHCH 53


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -1

Query: 300 TQNITIALNTDGCHRRHP--RRYVSEFNI 220
           TQN+ +ALN  GC  +     R V+++NI
Sbjct: 726 TQNLVLALNKFGCFAKEMVCLRDVNDWNI 754


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,005,145
Number of Sequences: 5004
Number of extensions: 13556
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)