Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10c10
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb... 30 0.38
SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni... 27 2.0
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 27 2.7
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 27 2.7
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.7
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 27 3.5
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ... 27 3.5
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 4.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 4.7
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 8.1
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 25 8.1
>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 476
Score = 29.9 bits (64), Expect = 0.38
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 394 GNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSN 510
GNG++ + D + +V+E +E DGG S T+N
Sbjct: 212 GNGYHDSSSMSDSRDASDNDVEEYNEDGDGGSSDAATAN 250
>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 119
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 174 CGRL*DRTTRPWTTC*NTRNAGESDQ 251
CG L + TT WTTC ++ S+Q
Sbjct: 13 CGNLLESTTAQWTTCDQCQSVYPSEQ 38
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +1
Query: 493 YRPTSNIHSFEGSPSYSQDAAQFSEEYAGTPSGYNAPT-XXXXXXXXXXDNTFEHNQYEQ 669
Y P N SF+ S SYS ++ SEE P+ + T N++ Q+
Sbjct: 281 YSPVLN--SFDDSDSYSSTDSELSEEAFLLPAQASRKTQKIHYINDNDPSNSYSSYQHSH 338
Query: 670 LRDFLPHN 693
+ DF+ N
Sbjct: 339 VHDFIHKN 346
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 436 QNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPS-YSQDAAQFSE 567
+ N+ N NH +DG + YRP + +PS Y + Q S+
Sbjct: 455 ETNAMNQTSNHSHADGQRYYRPEQDRSQRLRNPSDYGRQGRQSSQ 499
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 2.7
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 397 NGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAA 555
NG++S+++ +D +NN + N P RP S++ SP + QDAA
Sbjct: 33 NGNSSYDSIKDSSKNNKDVAEVNEYPR------RPESSVSVVSNSP-HRQDAA 78
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 532 PSYSQDAAQFSEEYAGTPSGYNAPT 606
P+ +A F E AG P G+NAP+
Sbjct: 366 PTMPSEAKGFIESGAGQPLGFNAPS 390
>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/61 (22%), Positives = 27/61 (44%)
Frame = +1
Query: 385 VTPGNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFS 564
V G+ S + +N Y+ N S GG++ +++ S+ PS + D A +
Sbjct: 95 VRGGDTSYSRRHDDSSYSSNKYSTGGNDSYSSGGRNEDYSTSGGSYTTDPSRTDDTASYG 154
Query: 565 E 567
+
Sbjct: 155 Q 155
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 26.2 bits (55), Expect = 4.7
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = +1
Query: 397 NGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYA 576
+G NS S+D N ++ E HE ++ + +SN S +GS S S S +
Sbjct: 130 SGTNSEVVSDDEEDGNFASIPELHEDNEYHSNLATSSNPFS-DGSSSKSASLTASSAAAS 188
Query: 577 GTPSGYNAPT 606
T S A T
Sbjct: 189 PTVSFSPAST 198
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +1
Query: 286 PYPVKIKERVPYPVHVAKPYPVPVPQIIKVPHIVTP 393
P P P PV AK PVP P + P + TP
Sbjct: 1218 PVPTPSAGLPPVPVPTAKAPPVPAPS-SEAPSVSTP 1252
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.4 bits (53), Expect = 8.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -3
Query: 291 IRHWNFNSNCLCNFDHFHRR 232
+ W+FN L N H HR+
Sbjct: 449 LSEWDFNRALLLNLQHMHRK 468
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 7 PFLHSSSYVTEIVSRNNHKTVLY 75
P L S S +IVS+NNH +LY
Sbjct: 344 PILLSDSSSYKIVSKNNHILLLY 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.131 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,981
Number of Sequences: 5004
Number of extensions: 60296
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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