Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c10
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    33   0.23 
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322...    29   3.7  
04_04_1429 - 33534021-33534427,33537697-33537862,33539299-335394...    29   4.8  
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192...    28   6.4  

>07_03_1530 + 27502546-27502671,27503487-27503561,27504670-27504746,
            27505576-27507522,27508478-27508946,27509898-27510079,
            27510746-27511208,27511295-27511691,27511810-27511937,
            27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
 Frame = +1

Query: 286  PYPVKIKERVPYPVHVAKPYPVPVPQIIKVPHIVTPGNGHNSHEASEDGVQNNSYNVQ-E 462
            P P      +P P  VA P+  P P     P  V P +G+N H+       NN+Y++Q  
Sbjct: 1155 PLPPPPPPPLPPPPPVA-PFHPPGPHF-SGPS-VPPHHGNNYHQPPSVPPPNNAYHLQPP 1211

Query: 463  NHEPSDGGQSY--RPTSNIHSFEGSPSYSQDAAQFSEEYAGTPS 588
             H P      Y   P  N   +  +PSY +       +Y G PS
Sbjct: 1212 PHPPFPNQYPYPPEPQQNTQPWNCNPSYPE-----RHQYEGIPS 1250


>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
            3220080-3223195,3223303-3223561,3223665-3223951,
            3224029-3224364,3224463-3224604,3224690-3224910,
            3224990-3225151,3225242-3225400,3225488-3225787,
            3226306-3226569,3227370-3227453
          Length = 1855

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +1

Query: 490  SYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTPS 588
            SY PTS  +S   SPSY+  +A++S  +A +PS
Sbjct: 1731 SYSPTSPNYS-PTSPSYNPSSAKYSPSHAYSPS 1762



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 475  SDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTPSGYNAP 603
            S    +Y PTS  +S   SPSYSQ +  +S     T SG  +P
Sbjct: 1770 SQTSPNYSPTSPTYS-PTSPSYSQPSPSYSPTSPYTTSGGPSP 1811


>04_04_1429 -
           33534021-33534427,33537697-33537862,33539299-33539496,
           33539568-33539810
          Length = 337

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 414 MTVMSIPRCYNMWNFNNLRYRNGVWFSD 331
           M  +S PR ++   FNNLRY  G+  SD
Sbjct: 255 MLDVSTPRAFDNAYFNNLRYNKGLLASD 282


>10_08_0523 -
           18518158-18518442,18518786-18518899,18518994-18519219,
           18519364-18519470,18519809-18519964,18520100-18520210
          Length = 332

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +1

Query: 421 SEDGVQNNSYNVQENHEPSDGG-QSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTPSGY- 594
           S +G   NSYN  E  E S GG ++ R TS         S +   AQ S   A   +G+ 
Sbjct: 117 SVNGGFMNSYNASERRESSKGGKETNRRTSVPSQAPAKSSSATHKAQASSHGAKKANGHA 176

Query: 595 -NAP 603
            NAP
Sbjct: 177 PNAP 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.131    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,251,984
Number of Sequences: 37544
Number of extensions: 388130
Number of successful extensions: 793
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)