Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c10
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   6.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 151  SHHSHTIPVEGYETELQDLGQHVE 222
            +H   T+P +    E  DL QHVE
Sbjct: 1261 NHGKRTLPAKNTYFEATDLQQHVE 1284


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 151  SHHSHTIPVEGYETELQDLGQHVE 222
            +H   T+P +    E  DL QHVE
Sbjct: 1257 NHGKRTLPAKNTYFEATDLQQHVE 1280


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 387 YNMWNFNNLRYRN 349
           YN +N+NN  Y N
Sbjct: 101 YNNYNYNNNNYNN 113


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 384 NMWNFNNLRYRNG 346
           N+W F  L Y+NG
Sbjct: 41  NLWRFPYLCYKNG 53


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 384 NMWNFNNLRYRNG 346
           N+W F  L Y+NG
Sbjct: 94  NLWRFPYLCYKNG 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.131    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,130
Number of Sequences: 438
Number of extensions: 4838
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)