Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c09
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    27   2.1  
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    26   3.7  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    26   4.9  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    26   4.9  
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    26   4.9  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.4  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    25   8.5  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    25   8.5  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   8.5  

>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 259 FLLELHDFKINQPAVPHKAKFPAIFMSILNLLVSSTRRIQA 137
           + L   D  +N   +   AKF  I++ ILNL ++ T  + A
Sbjct: 864 YFLRTLDITLNNEKLKSVAKFWRIYLKILNLRLNGTEWVSA 904


>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 100 SEHYDFCPFEFQNTYFPHDHIWQHFNFD 17
           S+ YD  PFE  N  F H+ I+ +F+ +
Sbjct: 8   SQSYDRGPFEEANKTFNHEIIYHNFSLN 35


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 439 NQTRNRNESERIASRREGRKKYHGKNQ 519
           N +RN NE+E I +R   + K H K +
Sbjct: 819 NSSRNGNEAEDIPARDRKKHKIHDKGK 845


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 66  KIHTSHTTIFGSISILMFHI 7
           KIH     +FGS+SI+  HI
Sbjct: 395 KIHRRPIIVFGSLSIIFIHI 414


>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 322 GQHFTTHKVKFILSFFTVPS*FLLELHDFKINQPAV 215
           G+HF    + F+  FF V S  +L  H FK+++  V
Sbjct: 291 GRHFLETNILFLSEFFEVSSTSILAKH-FKLSEEQV 325


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 85  FCPFEFQNTYFPHDHIWQHFNFDVSY 8
           F P  FQN   P  H++  F F ++Y
Sbjct: 258 FAPLRFQNQQLPLQHVYA-FLFSIAY 282


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -3

Query: 261 NFSSNYTILK--LINLQSLTKQSFPPYS 184
           N S NY+     L+   S T+QSFPP+S
Sbjct: 188 NNSVNYSYFSPNLLGNDSKTRQSFPPHS 215


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -1

Query: 440 FITAAGLKYSCDGTWCRTLTS 378
           F +A+ ++++CD T+  T+TS
Sbjct: 318 FCSASKIRFNCDETYAATITS 338


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 191 GGKLCFVRDCRLINFKIV*FEEKLTRHGKE 280
           G   C    CR +NF++V     + R GKE
Sbjct: 437 GKTSCLYAICRELNFEVVEIHPGMRRSGKE 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,923
Number of Sequences: 5004
Number of extensions: 46045
Number of successful extensions: 104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)