Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c08
         (705 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3YQV4 Cluster: Pentapeptide repeat domain protein; n=6...    34   3.9  
UniRef50_A6LZM3 Cluster: Putative uncharacterized protein; n=1; ...    33   9.0  

>UniRef50_Q3YQV4 Cluster: Pentapeptide repeat domain protein; n=6;
           canis group|Rep: Pentapeptide repeat domain protein -
           Ehrlichia canis (strain Jake)
          Length = 635

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +1

Query: 124 GLHLCTVIFNFERIKSSNLKNSQRKNVCMQTDNIETKSI 240
           GL L  V F+F  ++SS+ KNSQ KNV     N+E   +
Sbjct: 573 GLKLENVNFSFADLQSSHFKNSQLKNVDFSNANLENADL 611


>UniRef50_A6LZM3 Cluster: Putative uncharacterized protein; n=1;
           Clostridium beijerinckii NCIMB 8052|Rep: Putative
           uncharacterized protein - Clostridium beijerinckii NCIMB
           8052
          Length = 410

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 669 SVTLLIYLLFYSNVYTISRI*APNNKDAQITASVSISETFLNIFVLFC 526
           SV +LIY L    V+T+S I   NN+  ++    S+  +  NI  +FC
Sbjct: 291 SVKVLIYTLLSFGVFTLSFIYLINNRKREVGILYSLGASKKNIIFMFC 338


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 576,907,872
Number of Sequences: 1657284
Number of extensions: 10706042
Number of successful extensions: 25568
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25539
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)