Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c08
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U58754-4|AAX22292.1|  332|Caenorhabditis elegans Serpentine rece...    27   9.9  

>Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.7 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = +3

Query: 36  WDEPKCLYFLSFTCYEIQFMFKYNNSYYNWTPFMYCDLQFR 158
           W    C +F +F CY +  + + ++    WT F+   ++++
Sbjct: 74  WSYGPCRHFEAFICYSMMHVLQTSSLISGWTVFLTTFMKYQ 114


>U58754-4|AAX22292.1|  332|Caenorhabditis elegans Serpentine
           receptor, class sx protein15 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 25  TFYNGTNRNACIFFHLLAMKYSSCLNTITVIIIGLH-LCTVIF 150
           TFY+   R    F+ +    ++ CL T TV ++ L  L T++F
Sbjct: 75  TFYHYQIRRELCFYTMFPYVFAHCLQTGTVWVLSLDLLITILF 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,134,032
Number of Sequences: 27780
Number of extensions: 291467
Number of successful extensions: 806
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)