Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c06
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    25   3.8  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    24   5.0  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   5.0  
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun...    24   6.6  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    24   6.6  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    23   8.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    23   8.7  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    23   8.7  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    23   8.7  

>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 190 CKDLQDSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDNN 71
           CK  Q+S   +V+   G+GA+M      D+ ++ + +  N
Sbjct: 531 CKTFQNSISHIVSSFKGEGADMYADMLQDDVDLLKSIIEN 570


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 207 LHSNYVTQWTISIVNLKMVRNTHLFCKMYSKLV-ANKK 317
           L+ NY++ WT+       ++NTH   + Y   V  N+K
Sbjct: 367 LNRNYLSAWTLMGHEYVELKNTHAAIESYRLAVDVNRK 404


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 180 KSLHQHIQLLHSNYVTQW 233
           +S H +I  L+SNY T W
Sbjct: 166 QSAHPYISSLNSNYPTTW 183


>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
           Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 123

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 7/30 (23%), Positives = 20/30 (66%)
 Frame = +3

Query: 174 SCKSLHQHIQLLHSNYVTQWTISIVNLKMV 263
           + KSL  H++ +  N++ +W + +++++ V
Sbjct: 89  AAKSLITHLEEIKVNFMREWELKMISVEGV 118


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 74  IVHQS-VHLRIVVRSVDLHLRSFARAACHQHNGAIL*ILASTYTAVTLK 217
           I+H S VH+  +  S D+  + ++ +A H H   +    AST      K
Sbjct: 63  IIHDSAVHIAPLPSSCDIDFKDYSTSAFHLHFSPLTPNHASTEAVSNFK 111


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 190 CKDLQDSTVVLVARCSGKGAEMQV 119
           C+ +QD+ V++V   +G G   Q+
Sbjct: 106 CQQIQDNRVIVVVGETGSGKSTQI 129


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 79  PPVCSPPDCRPICGPASPLLCQSSVP 156
           PPV +PP   P   P+ P     S+P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLP 440


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 198 IQLLHSNYVTQWTISIVNLKMVRNTHLF 281
           I+ +  + VT+W +S+ +   +RN  LF
Sbjct: 894 IRKIIDSEVTEWDVSVDDSGCIRNPQLF 921


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 133 LLCQSSVPPTQR 168
           LLCQ+S+ PTQR
Sbjct: 108 LLCQASLNPTQR 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,300,782
Number of Sequences: 5004
Number of extensions: 24892
Number of successful extensions: 76
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)