Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c06
         (321 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   0.69 
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   1.2  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   2.1  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   2.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   2.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   6.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   8.4  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 23.4 bits (48), Expect = 0.69
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +1

Query: 73  YCPPVCSPPDCRPICGPASPLLCQSSVPPTQR--CYPVNPCI 192
           +CP V   P C  IC P    +C+      ++  C P + C+
Sbjct: 53  FCPNVVPKPLCIKICAPG--CVCRLGYLRNKKKVCVPRSKCL 92


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 73  YCPPVCSPPDCRPICGP 123
           +CP V   P C  IC P
Sbjct: 53  FCPNVVPKPLCIKICAP 69


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 73  YCPPVCSPPDCRPICGPASPLL 138
           +C P C P    P     SPLL
Sbjct: 43  FCLPFCGPNVINPFFCDMSPLL 64


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 185 LASTYTAVTLKLCNAMDDFYSEFKN 259
           LAST T   +K+   + DF+  F N
Sbjct: 477 LASTTTTNDIKMQKVLIDFWVSFVN 501


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 185 LASTYTAVTLKLCNAMDDFYSEFKN 259
           LAST T   +K+   + DF+  F N
Sbjct: 477 LASTTTTNDIKMQKVLIDFWVSFVN 501


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 258 FLNSL*KSSIALH 220
           FLN L KSS+ +H
Sbjct: 425 FLNQLKKSSVLVH 437


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -1

Query: 288 FYKTSVCF*PFLNSL*KSSIALHNLSVTAVYV 193
           +Y  S+C   F ++L   ++ LH+  V    V
Sbjct: 278 YYGVSICLVTFASALAVVTLNLHHRGVRGTRV 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,545
Number of Sequences: 438
Number of extensions: 1944
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)