Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c04
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11422| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_16221| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_41913| Best HMM Match : Rap_GAP (HMM E-Value=1.9e-06)               30   2.0  
SB_41604| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_45184| Best HMM Match : C2 (HMM E-Value=1.1e-22)                    29   2.6  
SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8)                     29   3.4  
SB_56389| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.5)            29   4.5  
SB_55753| Best HMM Match : CbiQ (HMM E-Value=1.7)                      29   4.5  
SB_5740| Best HMM Match : CDC14 (HMM E-Value=1.1)                      28   6.0  
SB_55877| Best HMM Match : RYDR_ITPR (HMM E-Value=1.8)                 28   7.9  

>SB_11422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +2

Query: 329 VRTVFWTMRALHAEMFPVLWTMPVVLQAILWALWTLSVSMRTVRPL 466
           V  V W +   H  + PV+W + +  + +   +W L++  R V P+
Sbjct: 89  VDPVVWMLTICHRVVGPVVWMLTICHRVVGPVVWMLTICHRVVGPV 134



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +2

Query: 329 VRTVFWTMRALHAEMFPVLWTMPVVLQAILWALWTLSVSMRTVRPL 466
           V  V W +   H  + PV+W + +  + +   +W L++  R V P+
Sbjct: 103 VGPVVWMLTICHRVVGPVVWMLTICHRVVGPVVWMLTICHRVVGPV 148


>SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 335 TVFWTMRALHAEMFPVLWTMPVVLQAILWALWTLSVSMRTVRPLRPMSFIWFVPV 499
           T+ W    L      ++W +PV   AI+W L   S ++     LR  + IW +PV
Sbjct: 376 TIIWK---LPVRSCTIIWKLPVRSCAIIWKLSLRSCTIIWKLRLRSCAIIWKLPV 427



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/86 (23%), Positives = 38/86 (44%)
 Frame = +2

Query: 335 TVFWTMRALHAEMFPVLWTMPVVLQAILWALWTLSVSMRTVRPLRPMSFIWFVPVLWANA 514
           T+ W    L      ++W + +   AI+W L   S ++     LR  + IW +PV  +  
Sbjct: 332 TIIWK---LPVRSCTIIWKLTLRSCAIIWKLLLRSCTIIWKLSLRSCTIIWKLPVR-SCT 387

Query: 515 ALWPEPSVWAVYPLWSVLLTRWNMVY 592
            +W  P V +   +W + L    +++
Sbjct: 388 IIWKLP-VRSCAIIWKLSLRSCTIIW 412


>SB_16221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 611 ETFTNAHTPYSTSLARRSTGGTLPIRRARATGRH 510
           +   + H P +    RRS GG LP+ +A++T  H
Sbjct: 483 DVMRSGHVPSAVRRNRRSKGGHLPLTKAKSTPMH 516


>SB_41913| Best HMM Match : Rap_GAP (HMM E-Value=1.9e-06)
          Length = 1035

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 352 ARLACRNVPRAVDHARRFASHTVGLVDPVRLDADRAAPAAHVLHLVRASL 501
           A   CR    +     RF S  +GL  P+RL    +APAA +L + + SL
Sbjct: 268 AATICRGTLSSHSEVLRFISQEIGLTSPLRLITIPSAPAA-LLRIDKISL 316


>SB_41604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 406

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = +2

Query: 266 TMRAQLWPMWALRSL*RPMWTVRTVFWTMRALHAEMFPVLWTMPVVLQAILWALWTLSVS 445
           T+ + L   WA+R   R    +  ++  MRA     F  +    +V   ++W+   LS  
Sbjct: 125 TVTSLLRATWAIR---RHRQQIEAMYGVMRARKEVDFTKVCAAIMVTYILMWSPSALSQV 181

Query: 446 MRTVRP-LRPM-SFIWFVPVLWANAALWPEPSVWAVYPLWSVLLTR 577
           +R+ RP LR + +  W   + +++A L P   +     LW  L  R
Sbjct: 182 VRSSRPSLRTLCANYWLTSLAFSSALLVPVIYITLDKRLWKGLTRR 227


>SB_45184| Best HMM Match : C2 (HMM E-Value=1.1e-22)
          Length = 344

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = +2

Query: 266 TMRAQLWPMWALRSL*RPMWTVRTVFWTMRALHAEMFPVLWTMPVVLQAILWALWTLSVS 445
           T+ + L   WA+R   R    +  ++  MRA     F  +    +V   ++W+   LS  
Sbjct: 125 TVTSLLRATWAIR---RHHQQIEAMYGVMRARKEVDFTKVCAAIMVTYILMWSPSALSQV 181

Query: 446 MRTVRP-LRPM-SFIWFVPVLWANAALWPEPSVWAVYPLWSVLLTR 577
           +R+ RP LR + +  W   + +++A L P   +     LW  L  R
Sbjct: 182 VRSSRPSLRTLCANYWLTSLAFSSALLVPVIYITLDKRLWKGLTRR 227


>SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8)
          Length = 355

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 439 RLDADRAAPAAHVLHLVRASLVGQCRPVARALRMGSVPPVERLANEV 579
           RLDA +     H+LH      V     VA+ L  G++P  E   N++
Sbjct: 14  RLDAAKGKKRLHLLHRASGEQVNALAEVAKNLIHGNIPLTEEQRNKL 60


>SB_56389| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.5)
          Length = 473

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +2

Query: 293 WALRSL*RPMWTVRTVFWTMRALHAEMFPVLWTMPVVLQAILWALWTLSVSMRTVRPLRP 472
           W  R L  PMW      W M A    + P+  T+    +AI+    T+     T+ P+  
Sbjct: 249 WLSRLLLLPMWVPMVYVWVMCA--CALLPICSTVQATKRAIINCCGTVE-RHTTLPPI-- 303

Query: 473 MSFIWFVP 496
           ++ IWF P
Sbjct: 304 VTAIWFGP 311


>SB_55753| Best HMM Match : CbiQ (HMM E-Value=1.7)
          Length = 448

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +2

Query: 293 WALRSL*RPMWTVRTVFWTMRALHAEMFPVLWTMPVVLQAILWALWTLSVSMRTVRPLRP 472
           W  R L  PMW      W M A    + P+  T+    +AI+    T+     T+ P+  
Sbjct: 233 WLSRLLLLPMWVPMVYVWVMCA--CALLPICSTVQATKRAIINCCGTVE-RHTTLPPI-- 287

Query: 473 MSFIWFVP 496
           ++ IWF P
Sbjct: 288 VTAIWFGP 295


>SB_5740| Best HMM Match : CDC14 (HMM E-Value=1.1)
          Length = 1156

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 387 HSTGNISACKARMVQNTVRTVHMGRYKDRKAHMGHSWARM 268
           H TG +    +R V NT+ T   G  +D  +    SW R+
Sbjct: 319 HFTGLVKGSASRRVSNTLHTRRQGDARDPTSSWPPSWIRV 358


>SB_55877| Best HMM Match : RYDR_ITPR (HMM E-Value=1.8)
          Length = 515

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -3

Query: 597 CTYTIFHLVSK-TLHRGYTAHTEGSGHRAALAHKTGTNQMKDMGRRGRTVRIETD 436
           C   I+ +V++  LHR  TA  EG   R +  +K      K     G+T R E D
Sbjct: 148 CVKGIYMIVTEHVLHRIQTADQEGQQSRLSQIYKVKEIHRKHKEEDGQTTRREKD 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,051,574
Number of Sequences: 59808
Number of extensions: 254409
Number of successful extensions: 783
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)