Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c04
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81111-3|CAB03267.1|  334|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z66567-5|CAA91492.4|  757|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z81111-3|CAB03267.1|  334|Caenorhabditis elegans Hypothetical
           protein T01G5.3 protein.
          Length = 334

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 386 WTMPVV-LQAILWALWTLSVSMRTVRPLRPMSFIWFVPVLWA 508
           W +PV  L    W  WT +V++     L P+S  +F+PV  A
Sbjct: 267 WYLPVFNLDIGNWIYWTSTVAISFFPVLDPLSLFYFLPVFGA 308


>Z66567-5|CAA91492.4|  757|Caenorhabditis elegans Hypothetical
           protein ZK455.8a protein.
          Length = 757

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 21/82 (25%), Positives = 34/82 (41%)
 Frame = -3

Query: 603 H*CTYTIFHLVSKTLHRGYTAHTEGSGHRAALAHKTGTNQMKDMGRRGRTVRIETDRVHK 424
           H C    F+  S +   GYT +T      + +A     N+ ++     +    E D VH 
Sbjct: 200 HWCKIPFFNEESFSAELGYTNYTWDQVLNSTIAFPRTFNKQRNELHHDQCHYFERDYVHI 259

Query: 423 AHSMACKTTGMVHSTGNISACK 358
             S   +   M ++TG I+ CK
Sbjct: 260 KLSPWAQVKDM-NATGKINRCK 280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,321,096
Number of Sequences: 27780
Number of extensions: 189046
Number of successful extensions: 428
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)