Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c04
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14590.1 68414.m01735 expressed protein similar to GI:4406788...    31   0.92 
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains...    30   1.6  
At2g29940.1 68415.m03642 ABC transporter family protein similar ...    29   2.1  
At5g07310.1 68418.m00835 AP2 domain-containing transcription fac...    29   2.8  
At5g35460.1 68418.m04217 expressed protein                             29   3.7  
At5g07930.1 68418.m00918 RNA recognition motif (RRM)-containing ...    28   4.9  

>At1g14590.1 68414.m01735 expressed protein similar to GI:4406788,
           GI:6063544, GI:2827651, GI:10764853 from [Arabidopsis
           thaliana]
          Length = 386

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 629 FHNVYLETFTNAHTPYSTSLARRSTGGTLPIRRA 528
           FH   LE  ++A+ P++      S G ++P+RRA
Sbjct: 11  FHTASLEASSSANNPFAEGSGEMSPGPSIPLRRA 44


>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 510

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -3

Query: 597 CTYTIFHLVSKTLHRGYTAHTEGSGHRAALAHKTGTNQMKDMGRRGRTVRIETDRVHKAH 418
           C Y +F LVS ++H  +T +TE  G + + A+    N +       R  R++ +    + 
Sbjct: 40  CFYKMFGLVSNSVHIKFTEYTEDKGLKKSQAYDLIRNYLSSKS-TARAQRLKANESKNSK 98

Query: 417 SM 412
           S+
Sbjct: 99  SL 100


>At2g29940.1 68415.m03642 ABC transporter family protein similar to
            ABC1 protein GI:14331118 from [Nicotiana plumbaginifolia]
          Length = 1426

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +2

Query: 392  MPVVLQAILWALWTLSVSMRTVRPLRPMSFIWF---VPVLW 505
            +  V+ +  ++LW L       +PL P+ +IWF    PV W
Sbjct: 1315 LAAVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYYICPVAW 1355


>At5g07310.1 68418.m00835 AP2 domain-containing transcription
           factor, putative AP2 domain containing
           proteins/transcription factors
          Length = 263

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 638 NQHFHNVYLETFTNAHTPYSTSLARRSTGGTL 543
           NQ+++N YL    N++   S SLA   TGG++
Sbjct: 189 NQYYYNQYLHQGGNSNDALSYSLAGGETGGSM 220


>At5g35460.1 68418.m04217 expressed protein
          Length = 381

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
 Frame = +2

Query: 158 LLWTLLPWMCSLRTKP*SKSSAVRXXXXXXXXXXXXTMRAQLWPMWALRSL*RPMWTVRT 337
           L W ++ W CSL     S    V             T+R   W   A  +   P+ T R 
Sbjct: 155 LAWAIIVWRCSLVFS--SPDKIVSVLIHLLPGLVFFTIR---WWNPATFAAMHPVGTDRR 209

Query: 338 VFWTMRALHAEMFPVLWTMPVVLQAILWALWTLSVS-MRTVRPLR 469
           V W      A +F  L+ +P+V+  +   L+ L V+ +R  R LR
Sbjct: 210 VSWPYVEDKAYLFTWLFLVPLVVYTLWQVLYFLIVNVLRRQRLLR 254


>At5g07930.1 68418.m00918 RNA recognition motif (RRM)-containing
           protein similar to terminal ear1 [Zea mays] GI:3153237,
           SP|P08965 Meiosis protein mei2 {Schizosaccharomyces
           pombe}; contains Pfam profile: PF00076 RNA recognition
           motif (aka RRM, RBD, or RNP domain)
          Length = 282

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 524 PEPSVWAVYPLWSV 565
           P PS+W  YPLW +
Sbjct: 57  PPPSIWVYYPLWYI 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,706,843
Number of Sequences: 28952
Number of extensions: 178822
Number of successful extensions: 450
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)