Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10c03
(546 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 232 2e-62
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 232 2e-62
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 149 3e-37
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 147 8e-37
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 147 8e-37
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 91 1e-19
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 8e-05
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 39 4e-04
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 26 3.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 7.3
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha... 25 7.3
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 9.6
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 232 bits (568), Expect = 2e-62
Identities = 109/123 (88%), Positives = 113/123 (91%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVK+ IQDKEGIPPDQQRLIFAGKQL DGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 246 IQKESTLHLVLRLRGGXIEPSLRILAMKYXCEKMICRKCYARLHPRATNCRKTKCGHTNN 425
IQKESTLHLVLRLRGG IEPSL+ LA KY CEK ICRKCYARL PRATNCRK KCGHTN
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120
Query: 426 LRP 434
LRP
Sbjct: 121 LRP 123
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 232 bits (568), Expect = 2e-62
Identities = 109/123 (88%), Positives = 113/123 (91%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVK+ IQDKEGIPPDQQRLIFAGKQL DGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 246 IQKESTLHLVLRLRGGXIEPSLRILAMKYXCEKMICRKCYARLHPRATNCRKTKCGHTNN 425
IQKESTLHLVLRLRGG IEPSL+ LA KY CEK ICRKCYARL PRATNCRK KCGHTN
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120
Query: 426 LRP 434
LRP
Sbjct: 121 LRP 123
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 149 bits (360), Expect = 3e-37
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVK+ IQDKEGIPPDQQRLIFA
Sbjct: 63 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 122
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 123 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 3e-37
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVK+ IQDKEGIPPDQQRLIFA
Sbjct: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 198
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 199 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 149 bits (360), Expect = 3e-37
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVK+ IQDKEGIPPDQQRLIFA
Sbjct: 215 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 274
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 275 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 149 bits (360), Expect = 3e-37
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +3
Query: 24 KKS*ILRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFA 203
K+S + V+ MQIFVKTLTGKTITLEVE+SDTI+NVK+ IQDKEGIPPDQQRLIFA
Sbjct: 291 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 350
Query: 204 GKQLXDGRTLSDYNIQKESTLHLVLRLRGG 293
GKQL DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 351 GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 147 bits (357), Expect = 8e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVK+ IQDKEGIPPDQQRLIFAGKQL DGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 246 IQKESTLHLVLRLRGG 293
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 147 bits (357), Expect = 8e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVK+ IQDKEGIPPDQQRLIFAGKQL DGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 246 IQKESTLHLVLRLRGG 293
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 147 bits (357), Expect = 8e-37
Identities = 71/76 (93%), Positives = 74/76 (97%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
MQIFVKTLTGKTITLEVE+SDTI+NVK+ IQDKEGIPPDQQRLIFAGKQL DGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 246 IQKESTLHLVLRLRGG 293
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 90.6 bits (215), Expect = 1e-19
Identities = 40/76 (52%), Positives = 55/76 (72%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
M I VKTLTGK I L+++ +D + +K +++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 246 IQKESTLHLVLRLRGG 293
++ S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 41.5 bits (93), Expect = 8e-05
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +3
Query: 66 MQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 245
+ + +K + + V++ ++ +K I I ++QRLI+AG+ L D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 246 IQKESTLHLVLRL 284
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 39.1 bits (87), Expect = 4e-04
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +3
Query: 93 GKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYNIQKESTL 266
GK LE+E ++T +K + +PP++Q++I G QL D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.2 bits (55), Expect = 3.2
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 69 QIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSD--Y 242
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 243 NIQKESTLHLVL 278
+ T HLV+
Sbjct: 65 DATDLVTFHLVI 76
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 146 FDIFDSVGSFHLQCNGLPRKGFDEYLH 66
F ++S+G + L C + FDEYL+
Sbjct: 2887 FKPYESLGKYMLSCLDDGKYAFDEYLY 2913
>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 541
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 140 IFDSVGSFHLQCNGLPRKGFDEYL 69
IF VG+F C+ L ++GF E L
Sbjct: 43 IFPGVGNFGFVCDSLAKQGFLEPL 66
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 9.6
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +3
Query: 39 LRVVYFSNTMQIFVKTLTGKTITLEVEASDTIENVKAXIQDKEGIPPDQQRL 194
L V +S + + KTL +EA++ + +K Q K +PP + L
Sbjct: 618 LEVKNYSKSTDLLKKTLRIPRNDEPLEAANQFDLLKVSPQQKSEVPPKRNEL 669
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,157,151
Number of Sequences: 5004
Number of extensions: 42046
Number of successful extensions: 112
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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