Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c03
         (546 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    25   0.66 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.66 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   3.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   6.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   8.2  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -1

Query: 372 DGHSIYGKSFSHXYTSWRECEGKVQLXLL*VSKPGEVWIL 253
           DG+ +     +  Y   + C+G   +  + V K G +WIL
Sbjct: 98  DGNPLIAPYPNWSYNDVKYCDGLTSVYRMQVDKCGRLWIL 137


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 119 SFRHYRKCQS*XPRQGRYSSRPTTSHLCRETIXRWPHS 232
           S +H  KC +       +SS P  +H CR     W HS
Sbjct: 162 SVKHVAKCAT------DFSSWPYDTHRCRINFGSWVHS 193


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 16/68 (23%), Positives = 27/68 (39%)
 Frame = +3

Query: 117  EASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYNIQKESTLHLVLRLRGGX 296
            ++ DT E  K  +Q KEG     Q+  F G  L     + +       T+ ++     G 
Sbjct: 931  KSQDTTEVTKYILQYKEGDAGIWQQQEFTGPPLPYAALIDELKPATRYTIRVIAEGPAGR 990

Query: 297  IEPSLRIL 320
              PS  ++
Sbjct: 991  SVPSAELI 998


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 16/68 (23%), Positives = 27/68 (39%)
 Frame = +3

Query: 117  EASDTIENVKAXIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYNIQKESTLHLVLRLRGGX 296
            ++ DT E  K  +Q KEG     Q+  F G  L     + +       T+ ++     G 
Sbjct: 927  KSQDTTEVTKYILQYKEGDAGIWQQQEFTGPPLPYAALIDELKPATRYTIRVIAEGPAGR 986

Query: 297  IEPSLRIL 320
              PS  ++
Sbjct: 987  SVPSAELI 994


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 89  KGFDEYLHCVAKINHT*NL*LFTS*LDRE 3
           KG DEY+H + +     N    TS  D E
Sbjct: 530 KGIDEYVHRIGRTGRVGNRGRATSFFDPE 558


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 123 SDTIENVKAXIQDKEGIPPDQQRLIFAGKQ 212
           +DT+   K  I  K  I PD + L+   KQ
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ 761


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -1

Query: 324 WRECEGKV 301
           W++CEGK+
Sbjct: 200 WKQCEGKI 207


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -1

Query: 333 YTSWRECEGKVQLXLL*VSKPGEVWIL 253
           + ++++C G V    + + K   +WIL
Sbjct: 116 WANYKDCSGIVSAYKIAIDKFDRLWIL 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,043
Number of Sequences: 438
Number of extensions: 2883
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)