Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10c02
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 38 0.001
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 36 0.007
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 35 0.012
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 32 0.088
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 31 0.15
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 31 0.15
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 30 0.27
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 30 0.35
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 29 0.47
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 29 0.82
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 28 1.4
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 28 1.4
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 1.9
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 27 1.9
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 27 1.9
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 27 3.3
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu... 27 3.3
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 27 3.3
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun... 27 3.3
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 4.4
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.8
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 26 5.8
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.8
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 5.8
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|... 26 5.8
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 7.6
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 7.6
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ... 25 7.6
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +1
Query: 229 KCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQKSATKLSNEVQNSKEINIENTLN 408
+C CE +H KC+ +T K I ++W VC + + K + + N K +I T
Sbjct: 140 QCILCEDWFHEKCLQKTNKGIAIPDAETFEW--LVCSECSEKYRDHLLNQKHESIAGTER 197
Query: 409 ---LLSEKF 426
LSE F
Sbjct: 198 APLFLSENF 206
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 187 CAYCHRTLRHAESI-KCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQKSATKLS 360
C+ C T+ + SI C C +H C+ + K+ E + W+C CQ + T+ S
Sbjct: 197 CSVCTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNED-AWRCPYCQSNQTETS 254
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 34.7 bits (76), Expect = 0.012
Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
Frame = +1
Query: 187 CAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQ-KSATKLSN 363
C C + S++C C+ YH C+ + + G+ W CA C + K S
Sbjct: 262 CKVCKKWCAFDFSVQCADCKKYYHMDCV---VPPLLKKPPHGFGWTCATCSFATQRKKST 318
Query: 364 EVQNSKEINIENTLNLLSEKFELVNKIQLPKLHNE-LAHVKLVTERIDKQN 513
+ + ++ + E + + K HN+ L++V L + ++N
Sbjct: 319 FQKENANVDANHATENNLEGQATQKSVSILKGHNKALSNVSLQEDHGKRRN 369
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 31.9 bits (69), Expect = 0.088
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 181 MVCAYCHRTLRHAESIKCC-FCESKYHTKCMNETAKSICEGGDRGYQWKC 327
++C CH++ ++SI C +C S +H C+N ++ +WKC
Sbjct: 407 ILCFRCHKSALVSQSILACDYCNSYWHPDCLNPPLATL---PSNLRKWKC 453
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 172 FQRMVCAYCHRTLRHAESIKCCFCESKYHTKCMNE-TAKSICEGGD 306
+Q M CA C L++A ++C C H KC + K I + D
Sbjct: 414 YQIMRCALCGEFLKNAAGMQCIDCHYTCHKKCYPKVVTKCISKSSD 459
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +1
Query: 187 CAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQ 339
C YC + C CE+ YHT C++ SI + W C C+
Sbjct: 271 CEYCGLDKNPETILLCDGCEAAYHTSCLDPPLTSIPK-----EDWYCDACK 316
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +1
Query: 187 CAYCH-RTLRHAESIKCCFCESKYHTKCMNETAKSI 291
C +C R I+C C YH KC+ + K +
Sbjct: 1096 CIFCFCRLPESGVMIECEICHEWYHAKCLKMSKKKL 1131
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 30.3 bits (65), Expect = 0.27
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 187 CAYCHRTLRHAESIKCCF-CESKYHTKCMNETAKSICE 297
C C R+ HAE + C C+ YHT C+N A I E
Sbjct: 125 CVICGRS-DHAEVLLLCDGCDDAYHTYCLNMDAVPIEE 161
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 29.9 bits (64), Expect = 0.35
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 226 IKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQKSATKL 357
+ CC C+S YH C+ D Y W C C S+ K+
Sbjct: 310 VTCCICQSNYHYACVE---APFAPFSDIHY-WTCNSCIPSSLKI 349
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 226 IKCCFCESKYHTKCMNETAKSI 291
I+C C YH KCM + K +
Sbjct: 1185 IECELCHEWYHAKCMKMSKKKL 1206
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 29.5 bits (63), Expect = 0.47
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 304 DRGYQWKCAVCQKSATKLSNEVQNSKEINIENTLNLLSEKFELVN 438
D Y WK A+ SA LSN + K++++ + +S+ ++N
Sbjct: 771 DEKYSWKTALESLSAKSLSNLLVELKQLDLSKEYSKISDDTSILN 815
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 28.7 bits (61), Expect = 0.82
Identities = 22/85 (25%), Positives = 39/85 (45%)
Frame = +1
Query: 268 MNETAKSICEGGDRGYQWKCAVCQKSATKLSNEVQNSKEINIENTLNLLSEKFELVNKIQ 447
+NE +K+IC+ G+ G W + C K ++ + N + + + N KFE N
Sbjct: 518 VNEDSKNICKVGEVGEIWVYSDCLPK-LKAASVINNPQGEQLTDYENNQENKFEKNNSFM 576
Query: 448 LPKLHNELAHVKLVTERIDKQNEQI 522
L L + K+ + ++EQI
Sbjct: 577 DSGLKGFLHNEKIFV--LGNKDEQI 599
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 27.9 bits (59), Expect = 1.4
Identities = 24/69 (34%), Positives = 33/69 (47%)
Frame = +1
Query: 352 KLSNEVQNSKEINIENTLNLLSEKFELVNKIQLPKLHNELAHVKLVTERIDKQNEQILHE 531
+L E Q+ K+ EN + LS +E K L N A E+I++ N QI
Sbjct: 541 QLELERQDLKQAG-ENHYSNLSSDYETQIKSLESSLTNSQAECVSFQEKINELNSQI--- 596
Query: 532 IDEIKTKLN 558
DE+K KLN
Sbjct: 597 -DELKLKLN 604
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +1
Query: 172 FQRMVCAYCHRTLRHAESIKCCFCESKYHTKCMNETAKS 288
+Q M CA C ++ ++C C H KC+ + S
Sbjct: 422 YQIMRCAVCAELFSYSPGLQCENCSFVCHKKCVTKVLAS 460
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 27.5 bits (58), Expect = 1.9
Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Frame = +1
Query: 376 SKEINIENTLNLLSEKFELVNKIQLPKLHNELAHVKLVTERI-----DKQN--EQILHEI 534
SK +EN LNLL+EK N N + +L + + +K+N + +++
Sbjct: 750 SKNKKLENDLNLLTEKLNKKN-ADTESFKNTIREAELSKKALNDNLGNKENIISDLKNKL 808
Query: 535 DEIKTKLNGIRTVKHNKHRYRNAHFEDRVSNRLDDNDHLXMVNNTE 672
E T+L +++ + N+ + + +R+S D+ + +N +
Sbjct: 809 SEESTRLQELQS-QLNQDKNQIETLNERISAAADELSSMESINKNQ 853
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -1
Query: 121 ISQKHLHENLK*LWTVVNYYINLIIIKIVVMSKP 20
I++ +LHENLK L + + + L +K++ +S P
Sbjct: 659 IARSNLHENLKKLLAIPHDKLRLYALKVLKLSVP 692
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 27.5 bits (58), Expect = 1.9
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +1
Query: 358 SNEVQNSKEINIE-NTLNLLS-EKFELVNKIQLPKLHNELAHVKLVTERIDKQNEQILHE 531
+N+ + SK E N + +L E +++N + H + +ID +NE+I H
Sbjct: 100 ANDTEISKTSQFEDNVMGMLQDENVQVLNTNTITISEESEFHASKIA-KIDSRNEEITHI 158
Query: 532 IDEIKTKLN 558
E +T+LN
Sbjct: 159 PFETQTELN 167
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 424 FELVNKIQLPKLHNELAHVKLVTERIDKQNEQILHEIDEIKTKLNGIRT 570
F+ N +++PKL +L + + +E+ L E +KT+L RT
Sbjct: 658 FQFQNSLEVPKLEAKLEESQQHYDSFTILDERPLEEYHTLKTQLERYRT 706
>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 26.6 bits (56), Expect = 3.3
Identities = 21/85 (24%), Positives = 40/85 (47%)
Frame = +1
Query: 322 KCAVCQKSATKLSNEVQNSKEINIENTLNLLSEKFELVNKIQLPKLHNELAHVKLVTERI 501
K + +K + S+ N+K + L + F+ +N+ QL L + +K +
Sbjct: 34 KLLIFEKQVRQASDTSTNTKVLIYIADLLFRAGDFQGLNE-QLVSLFKKHGQLKQSMTSL 92
Query: 502 DKQNEQILHEIDEIKTKLNGIRTVK 576
+ L ID++KTK+N I T++
Sbjct: 93 VQHVMTYLPGIDDLKTKINLIETLR 117
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 26.6 bits (56), Expect = 3.3
Identities = 24/91 (26%), Positives = 39/91 (42%)
Frame = +1
Query: 373 NSKEINIENTLNLLSEKFELVNKIQLPKLHNELAHVKLVTERIDKQNEQILHEIDEIKTK 552
N K INI + ++ + L N IQ + V + ID+Q + + + +E
Sbjct: 601 NVKNINIVSNVDPANASTPLSNTIQ-----DRFRGFTFVNKSIDEQFQNLGLQENEETDN 655
Query: 553 LNGIRTVKHNKHRYRNAHFEDRVSNRLDDND 645
L+ RT H+ N+H R +D ND
Sbjct: 656 LHACRTTTHSSVNSINSHGNPRT---VDAND 683
>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 26.6 bits (56), Expect = 3.3
Identities = 21/85 (24%), Positives = 40/85 (47%)
Frame = +1
Query: 322 KCAVCQKSATKLSNEVQNSKEINIENTLNLLSEKFELVNKIQLPKLHNELAHVKLVTERI 501
K + +K + S+ N+K + L + F+ +N+ QL L + +K +
Sbjct: 34 KLLIFEKQVRQASDTSTNTKVLIYIADLLFRAGDFQGLNE-QLVSLFKKHGQLKQSMTSL 92
Query: 502 DKQNEQILHEIDEIKTKLNGIRTVK 576
+ L ID++KTK+N I T++
Sbjct: 93 VQHVMTYLPGIDDLKTKINLIETLR 117
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/94 (18%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +1
Query: 352 KLSNEVQNSKEI-NIENTLNLLSEKFELVNKIQLPKLHNELAHVKLVTERIDKQNEQILH 528
++ EV +++ N E L +E+++L+ + L NEL+ +K + +LH
Sbjct: 55 RIVTEVNYEQQLRNSEKKLLQSNERYDLLED-ERKLLENELSQIKEYLREKSSSYDTVLH 113
Query: 529 EIDEIKTKLNGIRTVKHNKHRYRNAHFEDRVSNR 630
+ +K+ ++ + +++ + A ++ +S++
Sbjct: 114 DCSSLKSVNEALKQAQ-DQNLKQTAQLQNLLSDK 146
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 388 NIENTLNLLSEKFELVNKIQLPKLHNELAHVKLVTERID 504
N L+ SEK E+ NK L + H E +K+ ID
Sbjct: 1581 NFTIDLHQRSEKHEVKNKANLGRKHQEATSMKVHLAEID 1619
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 25.8 bits (54), Expect = 5.8
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Frame = +1
Query: 391 IENTLNLLSEKFELVNKIQLPKLHNELAHVKLVTERIDKQNEQ--ILHEIDEIKTKLNGI 564
IE+ N L EK E + L + A ++L KQ EQ + +++ K L+
Sbjct: 106 IEDQNNSL-EKTEFIALQNANSLQDTQAKLRLDPLLAIKQQEQKQLQTLMEKRKYSLDSD 164
Query: 565 RTVKHNKHRYRNAHF-EDRVSNRLDDNDH 648
R K +HR R+ +DR R D+ H
Sbjct: 165 RKSKERRHRDRHHRSNQDRSRERSDNEQH 193
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 490 TERIDKQNEQILHEIDEIKTKLNGIRTVKHNKHRYRNAHFEDRVS--NRLDDN 642
+ER + + +L+E DEI LN +T+K N+ ++ +S L+DN
Sbjct: 580 SERKILKRDSLLNEDDEIFNDLNSDKTIKTNQATSTSSSNTQEISYTGTLNDN 632
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 610 EDRVSNRLDDNDHLXMVNNTEKS 678
+ RVS+ +D++D + +NTEKS
Sbjct: 36 KSRVSDEIDEHDSIPEQSNTEKS 58
>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 25.8 bits (54), Expect = 5.8
Identities = 21/77 (27%), Positives = 39/77 (50%)
Frame = +1
Query: 337 QKSATKLSNEVQNSKEINIENTLNLLSEKFELVNKIQLPKLHNELAHVKLVTERIDKQNE 516
+KS+ KL NE++ +K E+ LS E+ + L K + A T I +
Sbjct: 114 RKSSDKLINEIEKTKSSLREDVKTALS---EVRLNLNLEKGRMKDAATSRNT-NIHENET 169
Query: 517 QILHEIDEIKTKLNGIR 567
+IL+E+D + ++N ++
Sbjct: 170 KILNEVDILHKEINDMK 186
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 620 TRSSKCAFLYLCLLCLTVRIPFNLV 546
+R + FL L +C T+ IP N+V
Sbjct: 101 SRFCRDVFLILAAICCTILIPINIV 125
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.4 bits (53), Expect = 7.6
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +1
Query: 343 SATKLSNEVQNSKEINIENTLNLLSEKFELVNKIQLPKLHNELAHVKLVTERIDKQNEQI 522
S +++NE+++ LLSE+ EL K+ L + +L K E + + N +
Sbjct: 912 SLKQINNELESELLEKTSKVETLLSEQNELKEKLSLEE--KDLLDTKGELESLRENNATV 969
Query: 523 LHEIDEIKTKLNGIR 567
L E E + ++
Sbjct: 970 LSEKAEFNEQCKSLQ 984
>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 311
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 194 TVTEHFGTLKVSNVVFANRNTIRSV*MKRLKVSAKEEIGDINGN 325
T FG K V F + I +V +K +K +E+ +I GN
Sbjct: 100 TAVSGFGANKKYTVQFLDYPDIETVSLKHIKAMPEEKRQEIEGN 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,111
Number of Sequences: 5004
Number of extensions: 52507
Number of successful extensions: 229
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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