Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10c02
(679 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD fi... 35 0.043
At1g50620.1 68414.m05688 PHD finger family protein contains Pfam... 35 0.057
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam... 34 0.099
At2g27980.1 68415.m03391 expressed protein 33 0.13
At5g22760.1 68418.m02658 PHD finger family protein contains Pfam... 33 0.17
At4g10370.1 68417.m01702 DC1 domain-containing protein contains ... 32 0.40
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 31 0.53
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 31 0.53
At3g02930.1 68416.m00288 expressed protein ; expression support... 31 0.70
At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger) fa... 31 0.70
At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa... 31 0.70
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 31 0.93
At1g77250.1 68414.m08997 PHD finger family protein contains Pfam... 31 0.93
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c... 31 0.93
At3g08020.1 68416.m00979 PHD finger protein-related contains low... 30 1.2
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ... 30 1.2
At5g53430.1 68418.m06640 PHD finger family protein / SET domain-... 30 1.6
At3g49760.1 68416.m05440 bZIP transcription factor family protei... 30 1.6
At2g21830.1 68415.m02594 DC1 domain-containing protein contains ... 30 1.6
At1g56040.1 68414.m06434 U-box domain-containing protein contain... 30 1.6
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 29 2.1
At4g01720.1 68417.m00223 WRKY family transcription factor simila... 29 2.1
At3g49590.2 68416.m05420 expressed protein 29 2.1
At3g49590.1 68416.m05419 expressed protein 29 2.1
At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6... 29 2.1
At1g79630.2 68414.m09284 protein phosphatase 2C family protein /... 29 2.1
At1g79630.1 68414.m09285 protein phosphatase 2C family protein /... 29 2.1
At3g54440.1 68416.m06023 glycoside hydrolase family 2 protein si... 29 2.8
At3g49140.1 68416.m05370 pentatricopeptide (PPR) repeat-containi... 29 2.8
At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger) fa... 29 2.8
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 29 3.7
At4g27910.1 68417.m04006 PHD finger protein-related / SET domain... 29 3.7
At4g17850.1 68417.m02662 hypothetical protein 29 3.7
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam... 29 3.7
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa... 29 3.7
At5g40320.1 68418.m04892 DC1 domain-containing protein contains ... 26 4.3
At5g58610.1 68418.m07345 PHD finger transcription factor, putative 28 4.9
At3g07290.1 68416.m00868 pentatricopeptide (PPR) repeat-containi... 28 4.9
At5g59210.2 68418.m07421 myosin heavy chain-related contains wea... 28 6.5
At5g56180.2 68418.m07009 actin-related protein, putative (ARP8) ... 28 6.5
At5g40990.1 68418.m04983 GDSL-motif lipase/hydrolase family prot... 28 6.5
At4g40060.1 68417.m05672 homeobox-leucine zipper protein 16 (HB-... 28 6.5
At4g12620.1 68417.m01988 replication control protein, putative s... 28 6.5
At3g62970.1 68416.m07074 zinc finger (C3HC4-type RING finger) fa... 28 6.5
At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative 28 6.5
At1g05380.1 68414.m00546 PHD finger transcription factor, putative 28 6.5
>At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD
finger family protein contains Pfam profiles: PF01448
ELM2 domain, PF00628 PHD-finger
Length = 631
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = +1
Query: 187 CAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVC---QKSATKL 357
C +C + + + C CE YHT+C K + E +W C C Q S TK
Sbjct: 412 CKHCDKPGTVEKMLICDECEEAYHTRCCGVQMKDVAEID----EWLCPSCLKNQSSKTKT 467
Query: 358 SNEVQNSKE 384
+ + ++
Sbjct: 468 KGRISHERK 476
>At1g50620.1 68414.m05688 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 629
Score = 34.7 bits (76), Expect = 0.057
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 181 MVCAYCHRTLRHAESIKCC-FCESKYHTKCMNETAKSICEGGDRGYQWKCAVC 336
M C C T+ E++ C CE YH KC++ A +I +G + +W C+ C
Sbjct: 322 MTCQICQGTINEIETVLICDACEKGYHLKCLH--AHNI-KGVPKS-EWHCSRC 370
>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 883
Score = 33.9 bits (74), Expect = 0.099
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +1
Query: 151 VHSLLSNFQRMVCAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCA 330
+ S L ++ ++C CH+ + C C+S HT C+ + + EG W C
Sbjct: 494 LRSYLDPYENIICTECHQGDDDGLMLLCDLCDSSAHTYCVG-LGREVPEG-----NWYCE 547
Query: 331 VCQKSA 348
C+ A
Sbjct: 548 GCRPVA 553
>At2g27980.1 68415.m03391 expressed protein
Length = 1037
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +1
Query: 190 AYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQ-WKCAV-CQKSATKLSN 363
++C I C CE ++H C+ E + I + + + W C++ C++ T L N
Sbjct: 759 SFCRLGFNARTVIICDQCEKEFHVGCLKE--RDIADLKELPEEKWFCSLGCEEINTTLGN 816
Query: 364 EVQNSKEINIENTLNLLSEK 423
+ +E N LN L +K
Sbjct: 817 LIVRGEEKLSNNILNFLRKK 836
>At5g22760.1 68418.m02658 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1566
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 139 LFNWVHSLLSNFQRMVCAYCHRTLRHAESIKCCFCESKYHTKC 267
+F+++ S N ++ CA CH + +SI C C+ H +C
Sbjct: 1069 IFSYLASRRDNTEKCSCASCHLDVFLRDSITCSTCQGFCHKEC 1111
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/52 (25%), Positives = 21/52 (40%)
Frame = +1
Query: 187 CAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQK 342
C C + + + C C H+ C +S C GG W+C C++
Sbjct: 1518 CQIC-KHVEPGPDLTCQTCNMTIHSHCSPWEEESTCIGG----SWRCGRCRE 1564
>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 687
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 130 VLMLFNWVHSLLSNFQRMVCAYCHRTLRHAESIKCCFCESKYHTKCM 270
V+ LF W ++ S+ + C C ++ A C CE K+H +C+
Sbjct: 114 VVPLF-WCNNKESDSREFQCGGCRDSMLSASYYACLQCEKKFHKECV 159
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +1
Query: 181 MVCAYCHRTLRHAESIKCC-FCESKYHTKCMNETAKSICEGGDRGYQWKCAVC 336
M C C T+ +++ C CE YH KC+ G +W C+ C
Sbjct: 46 MACQICEVTINEMDTLLICDACEKAYHLKCLQGNNMK----GVPKSEWHCSRC 94
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +1
Query: 181 MVCAYCHRTLRHAESIKCC-FCESKYHTKCMNETAKSICEGGDRGYQWKCAVC 336
M C C T+ +++ C CE YH KC+ G +W C+ C
Sbjct: 307 MACQICEVTINEMDTLLICDACEKAYHLKCLQGNNMK----GVPKSEWHCSRC 355
>At3g02930.1 68416.m00288 expressed protein ; expression supported
by MPSS
Length = 806
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = +1
Query: 322 KCAVCQKSATKLSNEVQNSKEINIENTLNLLSEKFELV------NKIQLPKLHNELAHVK 483
KCA + EV NS+ ++E+ + L EK EL+ K+ L K +L +
Sbjct: 330 KCASVSLVSVTKQLEVSNSRLHDMESEITDLKEKIELLEMTVASQKVDLEKSEQKLGIAE 389
Query: 484 LVTERIDKQNEQILHEIDEI 543
+ + +K+ E++ +E++ +
Sbjct: 390 EESSKSEKEAEKLKNELETV 409
>At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 642
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = +1
Query: 184 VCAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVC 336
VC C ES+ C C + +H C++ K++ QW C C
Sbjct: 14 VCMRCKSNPPPEESLTCGTCVTPWHVSCLSSPPKTLAS----TLQWHCPDC 60
>At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 645
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = +1
Query: 184 VCAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVC 336
VC C ES+ C C + +H C++ K++ QW C C
Sbjct: 14 VCMRCKSNPPPEESLTCGTCVTPWHVSCLSSPPKTLAS----TLQWHCPDC 60
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/76 (21%), Positives = 40/76 (52%)
Frame = +1
Query: 352 KLSNEVQNSKEINIENTLNLLSEKFELVNKIQLPKLHNELAHVKLVTERIDKQNEQILHE 531
K + + +E I++ + ++ E V +++L +L E +KL ER +++ ++
Sbjct: 675 KAFEQEKKLEEERIQSLKEMAEKELEHV-QVELKRLDAERLEIKLDRERREREWAELKDS 733
Query: 532 IDEIKTKLNGIRTVKH 579
++E+K + + T +H
Sbjct: 734 VEELKVQREKLETQRH 749
>At1g77250.1 68414.m08997 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 522
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = +1
Query: 184 VCAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQKSATKL 357
+C C + + C C+ YH CM +S+ G +W C C+ + K+
Sbjct: 404 LCRNCLTDKDDDKIVLCDGCDDAYHIYCMRPPCESVPNG-----EWFCTACKAAILKV 456
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/51 (25%), Positives = 17/51 (33%)
Frame = +1
Query: 184 VCAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVC 336
+C C + + C CE YH C K G + W C C
Sbjct: 242 ICKLCGEKAEARDCLACDHCEDMYHVSCAQPGGK-----GMPTHSWYCLDC 287
>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
contains Pfam PF01422: NF-X1 type zinc finger; similar
to transcriptional repressor NF-X1 (SP:Q12986) [Homo
sapiens]; similar to EST gb|T21002
Length = 1188
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Frame = +1
Query: 187 CAYCHRTLRHAESI-KCCFCESKYHTKCMNETAKS-----ICEGGDRGYQWKCAVCQKSA 348
C C+ + + +I C C S +H C+ A++ + ++G W+C CQ
Sbjct: 223 CMICYDKVGRSANIWSCSSCYSIFHINCIKRWARAPTSVDLLAEKNQGDNWRCPGCQSVQ 282
Query: 349 TKLSNEV 369
S E+
Sbjct: 283 LTSSKEI 289
>At3g08020.1 68416.m00979 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 764
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +1
Query: 139 LFNWVHSLLSNFQRMVCAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEG 300
LF+W S S VC C RT + + C C++ YH C + K++ G
Sbjct: 189 LFHW--SSWSCPSCRVCEVCRRTGDPNKFMFCKRCDAAYHCYCQHPPHKNVSSG 240
>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
binding domain-containing protein contains Pfam profiles
PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
binding domain
Length = 2176
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/68 (26%), Positives = 29/68 (42%)
Frame = +1
Query: 184 VCAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQKSATKLSN 363
VC C + C C+++YHT C+N I +G W C C A +++
Sbjct: 1289 VCKVCGVDKDDDSVLLCDTCDAEYHTYCLNPPLIRIPDG-----NWYCPSC-VIAKRMAQ 1342
Query: 364 EVQNSKEI 387
E S ++
Sbjct: 1343 EALESYKL 1350
>At5g53430.1 68418.m06640 PHD finger family protein / SET
domain-containing protein (TX5) contains Pfam domain,
PF00628: PHD-finger and PF00856: SET domain; identical
to cDNA trithorax 5 (TX5) partial cds GI:16118406
Length = 1043
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 166 SNFQRMVCAYCHRTLRHAESIKCCFCESKYHTKC 267
SNF + +C C + H +CC C + YH C
Sbjct: 715 SNFVK-ICVICKQI--HGSCTQCCKCSTYYHAMC 745
>At3g49760.1 68416.m05440 bZIP transcription factor family protein
similar to bZIP transcription factor GI:1769891 from
[Arabidopsis thaliana]
Length = 156
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +1
Query: 337 QKSATKLSNEVQNSKEINIENTLNLLSEKFELVN-KIQLPKLHNELAHVKLVTERIDKQN 513
+K KLSN +++K + +L +L KIQ +L N+L +V +R +N
Sbjct: 72 RKKKRKLSNR-ESAKRSREKKQKHLEEMSIQLNQLKIQNQELKNQLRYVLYHCQRTKMEN 130
Query: 514 EQILHEIDEIKTKLNGIRTV 573
+++L E + KL IR V
Sbjct: 131 DRLLMEHRILHDKLLNIRQV 150
>At2g21830.1 68415.m02594 DC1 domain-containing protein contains
Pfam profilePF03107: DC1 domain
Length = 569
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 184 VCAYCHRTLRHAESIKCCFCESKYHTKCMN 273
VC CH + +++ C CE+ YH +C++
Sbjct: 531 VCIICHERVL-GKAVSCMECETIYHLRCID 559
>At1g56040.1 68414.m06434 U-box domain-containing protein contains
Pfam profile PF04564: U-box domain
Length = 437
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +1
Query: 352 KLSNEVQNSKEINIENTLNLLSEKFELVNKIQLPKLHNELAHVKLVTERIDK--QNEQIL 525
KL E+++ KE E L + ++ E V KIQL + NE+ + +L E ++ + E IL
Sbjct: 196 KLEAELRHRKET--ETLLAIERDRIEKV-KIQLETVENEIDNTRLKAEEFERKYEGEMIL 252
Query: 526 HEIDEI 543
EI
Sbjct: 253 RRESEI 258
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385:
'chromo' (CHRromatin Organization MOdifier)
Length = 2228
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +1
Query: 232 CC-FCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQKSATKL 357
CC C YHT C+N K I G +W C C ++ L
Sbjct: 75 CCDSCPRTYHTACLNPPLKRIPNG-----KWICPKCSPNSEAL 112
>At4g01720.1 68417.m00223 WRKY family transcription factor similar
to wild oat DNA-binding protein ABF2, GenBank accession
number Z48431
Length = 489
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = +1
Query: 454 KLHNELAHVKLVTERIDKQNEQILHEIDEIKTKLNGIR 567
K +++ +KL ER+ ++N ++ H +DE+ N ++
Sbjct: 94 KTKTQISRLKLELERLHEENHKLKHLLDEVSESYNDLQ 131
>At3g49590.2 68416.m05420 expressed protein
Length = 603
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 339 LANSAFPLISPISSFADTFSRFIHTLRMVFRFA 241
LA+S + LI +SSF+D FS + FRFA
Sbjct: 175 LASSGYDLIYKVSSFSDIFSGPVTETMKEFRFA 207
>At3g49590.1 68416.m05419 expressed protein
Length = 603
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 339 LANSAFPLISPISSFADTFSRFIHTLRMVFRFA 241
LA+S + LI +SSF+D FS + FRFA
Sbjct: 175 LASSGYDLIYKVSSFSDIFSGPVTETMKEFRFA 207
>At2g22430.1 68415.m02660 homeobox-leucine zipper protein 6 (HB-6) /
HD-ZIP transcription factor 6 identical to
homeobox-leucine zipper protein ATHB-6 (HD-ZIP protein
ATHB-6) (SP:P46668) [Arabidopsis thaliana]
Length = 311
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 493 ERIDKQNEQILHEIDEIKTKLNG 561
+ + + NE +L EI ++KTKLNG
Sbjct: 138 DSLRRDNESLLQEISKLKTKLNG 160
>At1g79630.2 68414.m09284 protein phosphatase 2C family protein /
PP2C family protein contains Pfam PF00481 : Protein
phosphatase 2C domain; similar to protein
phosphatase-2C GI:3643088 from [Mesembryanthemum
crystallinum]
Length = 394
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +1
Query: 301 GDRGYQWKCAVCQKSATKLSNEVQNSKEINIENTLNLLSEKFELVNKIQLPKLHNELAHV 480
G G+Q KC ++ T S +VQ ++ + + E VN +LP+++ L H
Sbjct: 31 GANGFQIKCTEEEEVQTTESEQVQKTESVTTMD--EQWCELNPNVNNDELPEMYLPLKHA 88
Query: 481 KLVT-ERIDKQ 510
L + ++IDK+
Sbjct: 89 MLKSCQQIDKE 99
>At1g79630.1 68414.m09285 protein phosphatase 2C family protein /
PP2C family protein contains Pfam PF00481 : Protein
phosphatase 2C domain; similar to protein
phosphatase-2C GI:3643088 from [Mesembryanthemum
crystallinum]
Length = 504
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +1
Query: 301 GDRGYQWKCAVCQKSATKLSNEVQNSKEINIENTLNLLSEKFELVNKIQLPKLHNELAHV 480
G G+Q KC ++ T S +VQ ++ + + E VN +LP+++ L H
Sbjct: 141 GANGFQIKCTEEEEVQTTESEQVQKTESVTTMD--EQWCELNPNVNNDELPEMYLPLKHA 198
Query: 481 KLVT-ERIDKQ 510
L + ++IDK+
Sbjct: 199 MLKSCQQIDKE 209
>At3g54440.1 68416.m06023 glycoside hydrolase family 2 protein
similar to beta-galactosidase (lactase) from Alteromonas
haloplanktis [SP|P81650]; contains Pfam glycoside
hydrolase domains PF02836, PF02837, PF02929, PF02930
Length = 1107
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 146 TGC-TPYYQISKEWFVRTVTEHFGTLKVSNVVFANRNTI 259
TGC Y+QI KEW R + HF + + + N N +
Sbjct: 158 TGCYRTYFQIPKEWKDRRILLHFEAVDSAFFAWINGNPV 196
>At3g49140.1 68416.m05370 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1229
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/66 (22%), Positives = 33/66 (50%)
Frame = +1
Query: 463 NELAHVKLVTERIDKQNEQILHEIDEIKTKLNGIRTVKHNKHRYRNAHFEDRVSNRLDDN 642
N + H LV +R Q+++I E+D + K+ + V ++ + ED+ ++ +
Sbjct: 555 NRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHS 614
Query: 643 DHLXMV 660
+ L +V
Sbjct: 615 EKLAIV 620
>At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHG1a
GI:3822225 from [Arabidopsis thaliana]; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 494
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 187 CAYCHRTLRHAESIKCCFCESKYHTKCMNE--TAKSIC 294
C C + ++ E I C +YH +C+ + K++C
Sbjct: 442 CTICQESFKNEEKIATLDCGHEYHAECLEKWLIVKNVC 479
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 130 VLMLFNWVHSLLSNFQRMVCAYCHRTLRHAESIKCCFCESKYHTKCM 270
V++LF W ++ + + C C R A C CE +H +C+
Sbjct: 73 VVLLF-WCNTEQPDPEDFRCGACGRPTLSATYYACLICEKMFHKECV 118
>At4g27910.1 68417.m04006 PHD finger protein-related / SET
domain-containing protein (TX4) nearly identical over
285 amino acids to trithorax 4 [Arabidopsis thaliana]
GI:16118405; contains Pfam profiles PF00856: SET domain,
PF00855: PWWP domain; identical to cDNA trithorax 4
(TX4) partial cds GI:16118404
Length = 1027
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 166 SNFQRMVCAYCHRTLRHAESIKCCFCESKYHTKC 267
+NF + +C C + H +CC C + YH C
Sbjct: 700 TNFVK-ICVICKQI--HGSCTQCCKCSTYYHAMC 730
>At4g17850.1 68417.m02662 hypothetical protein
Length = 187
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Frame = +1
Query: 163 LSNFQR--MVCAYCHRTLRHAESIKCCFCE-SKYHTKCMNETAKSICEGGDRGYQWKCAV 333
LS+ +R VC C + CC C HT CM E + + W C
Sbjct: 30 LSHIEREITVCDTCGDQGYEYLLVICCNCGVGAEHTYCMMEKIDKVPDS------WSCYD 83
Query: 334 CQKSATKLSNEVQNSKEINIENTLNLLSEKFELVNK 441
C K ++ E N + + + + ++ FE K
Sbjct: 84 CTKEVDEMREEKGNEETSSRKRKADAVTNFFETAEK 119
>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
profile PF00628: PHD-finger
Length = 696
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +1
Query: 187 CAYCHRTLRHAES--IKCC-FCESKYHTKCMNETAKSICE-GGDRGYQWKCAVCQKSATK 354
C C + R +E+ + CC FC+ H +C + + + D Q+KC+ C+ + +
Sbjct: 299 CPVCLKVYRDSEATPMVCCDFCQRWVHCQCDGISDEKYMQFQVDGNLQYKCSTCRGESYQ 358
Query: 355 LSNEVQNSKEI 387
+ + +EI
Sbjct: 359 VKDLEDAVQEI 369
>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
family protein similar to C-terminal zinc-finger
[Glycine max] GI:558543; contains Pfam profile: PF00097
zinc finger, C3HC4 type (RING finger)
Length = 486
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +1
Query: 187 CAYCHRTLRHAESIKCCFCESKYHTKCMNE--TAKSIC 294
C C ++ + I C KYH +C+ + K++C
Sbjct: 428 CTICQENYKNEDKIATLDCMHKYHAECLKKWLVIKNVC 465
>At5g40320.1 68418.m04892 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 594
Score = 26.2 bits (55), Expect(2) = 4.3
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 457 LHNELAHVKLVTERIDKQNE-QILHEIDE-IKTKLNGIRTVKHNKHRYRNAHFEDRVSNR 630
+H+ A + V + ++ ++E + + E +E + +G+ + H HR + ED ++NR
Sbjct: 259 VHSRCATRRDVWDGLELEDEPEDIEECEEPFRVVSDGV--INHFSHREHDLRLEDGLTNR 316
Query: 631 LDDN 642
D+N
Sbjct: 317 HDEN 320
Score = 20.6 bits (41), Expect(2) = 4.3
Identities = 5/8 (62%), Positives = 7/8 (87%)
Frame = +1
Query: 319 WKCAVCQK 342
WKC VC++
Sbjct: 233 WKCGVCRR 240
>At5g58610.1 68418.m07345 PHD finger transcription factor, putative
Length = 1065
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +1
Query: 226 IKCCFCESKYHTKCMNETAKSICEGGDR--GYQWKCAV-CQKS 345
I C CE KYH C+ C+ D+ G +W C+ C++S
Sbjct: 759 ISCKQCELKYHPSCLR--YDGACDSLDKILGEKWFCSKDCEES 799
>At3g07290.1 68416.m00868 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535: PPR repeat
Length = 880
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = +1
Query: 238 FCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQKSATKLSNEVQNSKEINIE-NTLNLL 414
+C K HTKCM + G ++ C V Q K + + ++E+ +E T N +
Sbjct: 783 YCSKKKHTKCMELITLVLKSGFVPSFKSFCLVIQ--GLKKEGDAERARELVMELLTSNGV 840
Query: 415 SEKFELVNKIQLPKLHNELAHVKLVTERIDK 507
EK ++ ++ +E V + +D+
Sbjct: 841 VEKSGVLTYVECLMEGDETGDCSEVIDLVDQ 871
>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, gizzard smooth muscle
(Swiss-Prot:P10587) [Gallus gallus]
Length = 433
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/110 (18%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Frame = +1
Query: 346 ATKLSNEVQNSKEINIENTLNLLSEKFELVNKIQ-LPKLHNELAHVKLVTERIDKQNEQI 522
A+ +S + + ++I++ ++ +SE + V ++ KL +L + + ER++ +++
Sbjct: 227 ASLMSEKQELEQKISVLSSRASVSESGQKVFSVEDKEKLEKQLHDMAVALERLESSRQKL 286
Query: 523 LHEIDEIKTKLNGIRTVKHNKHRYRNAHFEDRVSNRLDDNDHLXMVNNTE 672
L EID +++ + + N + + +SN+ ++ + N E
Sbjct: 287 LMEIDNQSSEIE--KLFEENSNLSASYQESINISNQWENQVKECLKQNVE 334
>At5g56180.2 68418.m07009 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 387
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 325 CAVCQKSATKLSNEVQNSKEINIENTLNLLSEKFELVNKIQLPKLHNELAHVKLVTE 495
C V +LS + Q S E++ E L E+F+ + P+L + H KLV E
Sbjct: 317 CYVALDYKAELSKDTQASVEVSGEGWFTLSKERFQTGEILFQPRLAGIIVH-KLVYE 372
>At5g40990.1 68418.m04983 GDSL-motif lipase/hydrolase family protein
similar to lipase [Arabidopsis thaliana] GI:1145627;
contains Pfam profile PF00657: Lipase/Acylhydrolase with
GDSL-like motif
Length = 374
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 487 VTERIDKQNEQILHEIDEIKTKLNGIRTVKHNKHRYRNAHFED 615
VTE I+ NE++L+ + + +L+G + H+ H + D
Sbjct: 248 VTELINMHNEKLLNGLRRLNHELSGFKYALHDYHTSLSERMND 290
>At4g40060.1 68417.m05672 homeobox-leucine zipper protein 16 (HB-16)
/ HD-ZIP transcription factor 16 identical to
homeodomain leucine-zipper protein ATHB-16 (GP:5668909|)
{Arabidopsis thaliana}
Length = 294
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 493 ERIDKQNEQILHEIDEIKTKLNGIRTVKHNK 585
+ + + N+ +L EI +IK K+NG +NK
Sbjct: 135 DSLRRDNDSLLQEISKIKAKVNGEEDNNNNK 165
>At4g12620.1 68417.m01988 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1)[Homo sapiens]
SWISS-PROT:Q13415
Length = 813
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +1
Query: 187 CAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQ 339
C C ++ + I+C C +H KC+ K + EG W C C+
Sbjct: 169 CQICFKSDTNI-MIECDDCLGGFHLKCLKPPLKEVPEG-----DWICQFCE 213
>At3g62970.1 68416.m07074 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 276
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = +1
Query: 154 HSLLSNFQRMVCAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAV 333
HS + N + C C+ L +S+K HT M+ + I E Q++C +
Sbjct: 148 HSCIENSTKNSCPVCYEYL--FDSVKAAHVMKCGHTMHMDCFEQMINEN-----QYRCPI 200
Query: 334 CQKSATKLS 360
C KS +S
Sbjct: 201 CAKSMVDMS 209
>At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative
Length = 746
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/106 (18%), Positives = 41/106 (38%)
Frame = +1
Query: 160 LLSNFQRMVCAYCHRTLRHAESIKCCFCESKYHTKCMNETAKSICEGGDRGYQWKCAVCQ 339
++S + C+ C ++ C CE YH C+ + + I G A+
Sbjct: 529 IVSRSYPITCSICDEKFC-GKAFSCVTCEDIYHPMCI-QVGRRILVGHPLHVDHMLAISL 586
Query: 340 KSATKLSNEVQNSKEINIENTLNLLSEKFELVNKIQLPKLHNELAH 477
KS +K + N + T+ ++ E + + +P+ +H
Sbjct: 587 KSGSKCTACQLNITKYGYHCTICEINFHIECIKAVIVPRKIKSHSH 632
>At1g05380.1 68414.m00546 PHD finger transcription factor, putative
Length = 600
Score = 27.9 bits (59), Expect = 6.5
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 226 IKCCFCESKYHTKCMNETAKSI 291
+ C CE +YH C+N+ A +
Sbjct: 151 LSCGMCERRYHQLCLNDEAHKV 172
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,797,840
Number of Sequences: 28952
Number of extensions: 247284
Number of successful extensions: 924
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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