Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c01
         (512 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8469| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.9  
SB_5682| Best HMM Match : PH (HMM E-Value=0.23)                        27   9.1  

>SB_8469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 874

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 255 VDKIGHSSYKTMETSRIC-PCSATVNT 178
           +D++  S Y+T+ TSR C  C  TV T
Sbjct: 538 IDRVRKSRYQTVSTSRTCYSCQPTVGT 564


>SB_5682| Best HMM Match : PH (HMM E-Value=0.23)
          Length = 184

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 206 IREVSMVLYEEWPILSTRLVHHNVDRADGNDNVNAALKQELQ 331
           + E ++ + +E+P+ +  L+ + VDR    DN+   L  +LQ
Sbjct: 98  MHEHALSVRDEFPLANLPLIGYTVDRPSEGDNIEKDLVFKLQ 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,419,690
Number of Sequences: 59808
Number of extensions: 238248
Number of successful extensions: 416
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)