Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c01
         (512 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    23   4.6  
AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein p...    23   6.1  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   8.0  

>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 242 AIPRIRPWKLHEFALVPQQSILFNTSTRVMFFDNLST 132
           +I R   W++HEFA    Q I ++          LST
Sbjct: 202 SIARPETWEVHEFARSDHQLITYSVGEAEQQSRGLST 238


>AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein
           protein.
          Length = 455

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 254 TRLVHHNVDRADGNDNVNAALKQELQVS 337
           T L+  ++D       + AALK+ELQV+
Sbjct: 306 TELLVTHIDPLAEEQELKAALKEELQVN 333


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +2

Query: 245 ILSTRLVHHNVDRADGNDNVNAALKQELQVSIV*FNTCPTIEGTL 379
           + S++ + +  ++ DGND    + K+   V  +   T P +E +L
Sbjct: 366 LASSKTLVNEANKNDGNDQSVQSSKEIKSVFALHSQTAPLVEASL 410


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 467,307
Number of Sequences: 2352
Number of extensions: 8497
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 46514490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)