Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c01
         (512 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC009221-1|AAH09221.2|  324|Homo sapiens TNPO3 protein protein.        29   7.2  
AJ133769-1|CAB42643.1|  923|Homo sapiens nuclear transport recep...    29   7.2  
AF145029-1|AAD38537.1|  975|Homo sapiens transportin-SR protein.       29   7.2  

>BC009221-1|AAH09221.2|  324|Homo sapiens TNPO3 protein protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 188 VAEQGQIREVSMVLYEEWPILSTRLVHHNVD 280
           + E GQ      V+ E WP+LS  L  H  D
Sbjct: 40  IVENGQTHPCQKVIQEIWPVLSETLNKHRAD 70


>AJ133769-1|CAB42643.1|  923|Homo sapiens nuclear transport receptor
           protein.
          Length = 923

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 188 VAEQGQIREVSMVLYEEWPILSTRLVHHNVD 280
           + E GQ      V+ E WP+LS  L  H  D
Sbjct: 625 IVENGQTHPCQKVIQEIWPVLSETLNKHRAD 655


>AF145029-1|AAD38537.1|  975|Homo sapiens transportin-SR protein.
          Length = 975

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 188 VAEQGQIREVSMVLYEEWPILSTRLVHHNVD 280
           + E GQ      V+ E WP+LS  L  H  D
Sbjct: 659 IVENGQTHPCQKVIQEIWPVLSETLNKHRAD 689


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,674,427
Number of Sequences: 237096
Number of extensions: 1110337
Number of successful extensions: 1543
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4820001670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)