Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c01
         (512 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62030.1 68414.m06996 DC1 domain-containing protein contains ...    29   1.8  
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ...    27   5.6  
At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative (CH...    27   7.4  

>At1g62030.1 68414.m06996 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 743

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 326 ALASRQHSHCHFHRLCPRCDVLASSIKSAIPRI 228
           +L S  H+ C F+ +CP CD +A     ++PR+
Sbjct: 299 SLCSLTHTSCPFY-ICPPCDFVAHQRCISLPRV 330


>At5g03360.1 68418.m00289 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 1610

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 308 HSHCHFHRLCPRCDVLASSIKSAIPRI 228
           H+ C F+ +CP CD +A     ++PR+
Sbjct: 299 HTRCPFY-ICPPCDFVAHQSCFSLPRV 324


>At3g53720.1 68416.m05934 cation/hydrogen exchanger, putative
           (CHX20) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 842

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 21/44 (47%), Positives = 22/44 (50%)
 Frame = -1

Query: 326 ALASRQHSHCHFHRLCPRCDVLASSIKSAIPRIRPWKLHEFALV 195
           ALA RQ  H     L P  DVLASSI   IP I   + H  A V
Sbjct: 780 ALAERQAEH---PELGPIGDVLASSINHIIPSILVVQQHNKAHV 820


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,314,468
Number of Sequences: 28952
Number of extensions: 166885
Number of successful extensions: 339
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)