Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b22
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    27   2.6  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    27   2.6  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    27   3.5  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    26   6.0  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    26   6.0  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   8.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.0  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   8.0  

>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -3

Query: 551 TPTTSWRIYKIHGFSKEPNSLGANFIIISYNAMFGLKSAVLLSPSSN 411
           TP    +++  +G    PN   A   +ISY   + ++ A++L+ S++
Sbjct: 787 TPVVRPKLHNTYGLDHYPNGTNAVVAVISYTG-YDMEDAMILNKSAH 832


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 90  IFQNIYNFLHNLKLKYKLSNFTLQTTSHL 4
           I + +YNF+H+   ++K+    +  T H+
Sbjct: 203 IIETLYNFIHDQVKQFKIDGLRVDATKHV 231


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 341  IELHLKWLSVKQDERNQLSQL 403
            +EL LKW+S + + RN LS +
Sbjct: 1339 VELPLKWMSTESNARNWLSSI 1359


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 419  SSNIKPIVTIDSSRLVSHSTISS 351
            S N++P++  DS  +  HS ISS
Sbjct: 1101 SENVEPVLADDSDAVTIHSNISS 1123


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/69 (21%), Positives = 32/69 (46%)
 Frame = +1

Query: 460 LYDMIMKLAPNEFGSLLNPCILYMRQEVVGVDALKLKSLRHLGLIKGKAILRLLNKLEDA 639
           +Y+++ K+    FGS+         +EVV + ++K K  +     + + +  LL   E+ 
Sbjct: 35  VYNVVRKVGDGTFGSVYLATTKTPSKEVVAIKSMKKKLAKVSDATRLREVHSLLRLSENE 94

Query: 640 RQANVSAVY 666
              N+  +Y
Sbjct: 95  NIVNIFDLY 103


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/66 (22%), Positives = 35/66 (53%)
 Frame = +1

Query: 442  FNPNIALYDMIMKLAPNEFGSLLNPCILYMRQEVVGVDALKLKSLRHLGLIKGKAILRLL 621
            FN  + L + I+ L P    + L   +LY++   V +DAL   +  ++ ++  + ++ ++
Sbjct: 853  FNIKLDLRESIIGLNPRTLEAKL---LLYLKSLDVEIDALVASNPLNIRIMAAETVVYII 909

Query: 622  NKLEDA 639
            +KL  +
Sbjct: 910  DKLNQS 915


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 223  LQILEDACKKQGF--QPLDYNLKFHNQIMDLTTTIRFSNVP 339
            L++  D CK QGF   P+   ++F     +LT     + +P
Sbjct: 2624 LKLFNDECKAQGFIEFPVALEMRFSESTSELTLNSAVNYIP 2664


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 259 FQPLDYNLKFHNQIMDLTTTIRFSN 333
           FQ  +  LK HN +  + T +R+SN
Sbjct: 227 FQSDNCKLKSHNSLPSIRTNVRYSN 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,476
Number of Sequences: 5004
Number of extensions: 54373
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)