Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b22
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12718| Best HMM Match : rve (HMM E-Value=0.0031)                    29   2.8  
SB_18597| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_12718| Best HMM Match : rve (HMM E-Value=0.0031)
          Length = 1667

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 5/115 (4%)
 Frame = +1

Query: 241  ACKKQGFQPLDYNLKFHNQIMDLTT--TIRFSNVPNRATLEMVECETRREESIVTIGLML 414
            A  KQ F   DY LK +NQ     +  ++R   + +  T   +     +++    +G   
Sbjct: 1347 ALAKQNFTDTDYALKLYNQTRPKQSLESMRAPELSDYYTASRLLAYRPQKDH---LGTTR 1403

Query: 415  EDGERRTADFNPNIALYDMIM---KLAPNEFGSLLNPCILYMRQEVVGVDALKLK 570
             DG R      P  A Y  +M   +++  E  + L P I Y R    GV AL  K
Sbjct: 1404 ADGNRLLETDTPVAAHYRHVMAAKRMSDEELDAFLRP-IYYARGGFQGVTALHAK 1457


>SB_18597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
 Frame = +1

Query: 238 DACKKQGFQPLDYNLKFHNQIMDLTTTIR------FSNVPNRATLEMVECETRREESIVT 399
           D  K++ F PL   L   +  +D+  +        FS+  ++      ECET R  + + 
Sbjct: 41  DTGKRRSFDPLSLALNIASSELDVQRSRADKAEGAFSDCQHKLQEAWNECETLRTTAALL 100

Query: 400 IGLMLEDGERRTADFNPNIALYDMIMK 480
                E+ ER  + F   +A    IMK
Sbjct: 101 ESTQKEEMERIRSHFQEELASLQHIMK 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,778,455
Number of Sequences: 59808
Number of extensions: 383298
Number of successful extensions: 989
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)