Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b21
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    27   3.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   5.0  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   6.6  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   8.7  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    25   8.7  

>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 354 NVPINGVNVHDIIGYKFDYGPVARSPRAGR 443
           N  +NG N    +G+ F Y P AR P  GR
Sbjct: 523 NGVMNG-NQRQFLGFTFKYRPNARKPLVGR 551


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +1

Query: 58   VIQFKNYKKYLVTEIVNMRSSGLVLFACAGLLFSGGAILGGSAAWSLFRMSYYF 219
            V+QF N+ K  +T I+   S G  +       +S  + L  S    L+ +S +F
Sbjct: 3910 VVQFNNFTKREITTILITASDGSAVTTSLSTFYSASS-LASSVVKPLYILSTFF 3962


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +1

Query: 502 SSFAAMQLELKC--CGVNSNLDWYKHRS-SYPPAC 597
           S +A   + ++C  CG+  NLD+ KH S    PAC
Sbjct: 796 SGYALGDVHVQCDNCGLRVNLDFIKHISMPCVPAC 830


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 548  ILTWIGISTEARILRRAADVLLMKSAGKGVIFPCTRRVACV 670
            +L W G S    IL   +++L + S  +    P  RRVA V
Sbjct: 1779 VLLWCGSSNNIEILDDESNLLRLMSLVEKYSLPFLRRVALV 1819


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 230 SEVQK*YDIRNRLHAADPPKMAPPLNKSP 144
           SE    YD R+RLH   PP     L+  P
Sbjct: 153 SESSAYYDSRSRLHGIQPPPKRRTLSPPP 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,452
Number of Sequences: 5004
Number of extensions: 59621
Number of successful extensions: 185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)