Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10b21
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43) 39 0.004
SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35) 36 0.046
SB_57007| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.061
SB_55062| Best HMM Match : MFS_1 (HMM E-Value=0.016) 33 0.25
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35) 31 1.3
SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0) 31 1.3
SB_23731| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_1090| Best HMM Match : Coagulin (HMM E-Value=8.1) 30 2.3
SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0) 30 2.3
SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0) 29 3.0
SB_34146| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08) 29 4.0
SB_48550| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_43077| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025) 28 7.0
SB_47462| Best HMM Match : Ras (HMM E-Value=0) 28 9.3
>SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)
Length = 211
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = +1
Query: 496 VRSSFAAMQLELKCCGVNSNLDW-----YKHRSSYPPACC 600
V +F A+Q + KCCGVN LDW Y S+ P +CC
Sbjct: 146 VTKAFDALQEKQKCCGVNGYLDWKASKKYNGTSTVPDSCC 185
>SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 37.9 bits (84), Expect = 0.009
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Frame = +1
Query: 517 MQLELKCCGVNSNLDW-----YKHRSSYPPACC--GRASNEKRGERCDFPLYPTGCLRPA 675
MQ + KCCG ++ DW K+ SS P +CC +A G + +Y GC
Sbjct: 137 MQTKFKCCGADNYTDWQSNIKMKNSSSVPDSCCKSEKAGCGVGGVKDPKDIYTKGCFTII 196
Query: 676 LIQLRNYVNSLSALASAMIV 735
++ + + LA A++V
Sbjct: 197 KGEIEKSLKPIGGLAIAVLV 216
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Frame = +1
Query: 493 AVRSSFAAMQLELKCCGVNSNLDWYKH-----RSSYPPACCGRASNE-KRGER-CDFPLY 651
+ R++ MQ +KCCG+ + DW + P +CC + G+R +Y
Sbjct: 237 SARNAVDDMQKTVKCCGITTYEDWKSSDNLGLTDNVPDSCCTTVEKDCGMGQRKTPTRIY 296
Query: 652 PTGCLRPALIQLRNYVNSLSALASAMIV 735
GC + N + ++ A+ ++V
Sbjct: 297 KEGCYMKIKKDIDNNLVAVGAVTITILV 324
>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
Length = 642
Score = 35.5 bits (78), Expect = 0.046
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +1
Query: 499 RSSFAAMQLELKCCGVNSNLDW-YKHRSSY---PPACCGRASNE 618
+++ AMQ++ +CCG DW + + Y P +CCG+ +N+
Sbjct: 484 KAAIDAMQMDFECCGAKGPSDWTFYGQMKYKAGPGSCCGKPNND 527
>SB_57007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 666
Score = 35.1 bits (77), Expect = 0.061
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +1
Query: 52 LYVIQFKNYKKYLVTEIVNMRSSGLVLFACAGLLFSGGAILGGSAAWSLFRMSYYF--WT 225
+Y++ +K YK Y T + M + LFA L S +LG + Y F W+
Sbjct: 381 IYIVHWKKYKLYFTTRRLVMFGASAWLFA---LTLSAPPLLGWGEYGYVHDQRYCFVLWS 437
Query: 226 SDLGVELSSSVLFIAGALLCLPTCWLSTLV 315
S+L + ++ G LL + C+ L+
Sbjct: 438 SNLFYMYFTVIICFFGPLLTMAVCYYKILM 467
>SB_55062| Best HMM Match : MFS_1 (HMM E-Value=0.016)
Length = 556
Score = 33.1 bits (72), Expect = 0.25
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Frame = +1
Query: 22 LKYSKYSL*DLYVIQFKNYKKYLVTEIVNM-RSSGLVLFACAGL----LFSGGAILGGSA 186
++Y Y +Y+ Q Y K + + G+ A GL LF G A+ G +
Sbjct: 66 VRYCMYMWLPMYLFQALGYSKLQAGLLSTVFEIGGVAGSASLGLIISRLFGGRAVYGVAL 125
Query: 187 AW---SLFRMSYYFWTSDLGVELSSSVLFIAGALLCLPTCWLS 306
++F +++F TS +G+ ++ +F+AGA C P +LS
Sbjct: 126 TVLGSTVFLAAFHF-TSHMGIPINCVFMFLAGACNCGPDPYLS 167
>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 32.7 bits (71), Expect = 0.33
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Frame = +1
Query: 496 VRSSFAAMQLELKCCGVNSNLDWYK------HRSSYPPACCGRASNEKRGERCDFPLYPT 657
+ ++ A+Q + KCCG+N DW + + S P +CC S + +Y
Sbjct: 406 ITDAYDAIQKKEKCCGINGFKDWQRSYYTKGNHSIVPDSCCKTVSKGCGINFKENDIYTK 465
Query: 658 GC 663
GC
Sbjct: 466 GC 467
>SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 31.1 bits (67), Expect = 1.00
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 517 MQLELKCCGVNSNLDW 564
+Q LKCCGVNS DW
Sbjct: 165 LQTNLKCCGVNSYTDW 180
>SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 525 ELHGSE-RASDRRIDGIQHHRLRHARVQSGRLAESARQARNRTYTQ 391
EL GS R + RID I ++R + RL ESA QA+N Q
Sbjct: 240 ELVGSNAREMEARIDEIIDQKIRELEKKRARLHESASQAKNEKLKQ 285
>SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35)
Length = 286
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +1
Query: 517 MQLELKCCGVNSNLDWYKHR----SSYPPACCG 603
+Q KCCG+ S DW +R SS P CG
Sbjct: 157 IQTRFKCCGIESYKDWQANRYFSCSSPVPTACG 189
>SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 280
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 442 ALNASMAQAMMLDAIDPAVRSSFAAMQLELKCCGVNSNLDW 564
AL + Q + DP + MQ LKCCGV S DW
Sbjct: 137 ALKERLKQDLKKYLDDPLNQDLIDFMQTLLKCCGVESYKDW 177
>SB_23731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1133
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = -2
Query: 494 AGSMASSII-ACAMLAFRAAGSRRARDRPVIELIPNDIMNIDAINRDIKVVNKEIDLG** 318
A ++A+ +I A A FR + R V+ +P+D ++ DA+N D++++ +E L
Sbjct: 685 AAAVANQLIQAVAAGGFRLT-KWVSNSRNVLRSLPSDEVSCDAVNLDLQILPQERAL--- 740
Query: 317 GTRVDSQQVGR 285
G ++D Q++ R
Sbjct: 741 GAKLDIQELWR 751
>SB_1090| Best HMM Match : Coagulin (HMM E-Value=8.1)
Length = 168
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Frame = +1
Query: 469 MMLDAIDPAVRSSFAAMQLELKCCGVNSNLDWYKHRSSYPPACCGRA-SNEKRGERCD-- 639
+ + + A S A + ++ G SN H + P C R E R E+
Sbjct: 15 LFIQYVTKATADSLCADEQNIQDGGETSNFSKTNHNRAKTPTGCTRVRKTESRIEKLGVK 74
Query: 640 -FPLYPTGCLRPALIQLRNYVNSLSAL 717
FP Y RP L++ R V+S + L
Sbjct: 75 PFPFYMLYTERPVLLRSRRPVSSKTVL 101
>SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 299
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 517 MQLELKCCGVNSNLDW 564
+Q LKCCG+NS DW
Sbjct: 165 LQTNLKCCGINSYNDW 180
>SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 252
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 9/82 (10%)
Frame = +1
Query: 493 AVRSSFAAMQLELKCCGVNSNLDWYK------HRSSYPPACCGRASNEKRGERCD---FP 645
AV + + + KCCG DW++ H P +CC S+ K E
Sbjct: 138 AVTRAIDEIHRDFKCCGNAQYRDWFETKWAKTHPDMVPRSCCKDPSDSKCNENISKDPTK 197
Query: 646 LYPTGCLRPALIQLRNYVNSLS 711
+Y GC L N ++ +S
Sbjct: 198 IYRRGCYMFVKKYLSNNLHVIS 219
>SB_34146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 185 ADPPKMAPPLNKSPAHANKTK 123
A PPK +PP KSPA K K
Sbjct: 59 ASPPKKSPPPEKSPAEKRKEK 79
>SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08)
Length = 357
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 472 MLDAIDPAVRSSFAAMQLELKCCGVNSNLDW 564
+L+ D ++R ++Q LKCCG DW
Sbjct: 169 ILNYQDDSIRDDLDSIQKNLKCCGFKDYNDW 199
>SB_48550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 595
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 501 SDRRIDGIQHHRLRHARVQSGRLAESARQARNRT 400
+DRRI GIQ R S +LA + +QAR T
Sbjct: 148 TDRRIMGIQARENTDRRAMSRQLASNGQQARENT 181
>SB_43077| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 448 NASMAQAMMLDAIDPAVRSSFAAMQLEL-KCCGVNSNLDWYKHRSSYP 588
N+S + +D SF A LE K G N+ +DW+ + S+P
Sbjct: 68 NSSRVHDVTFPWVDLVTERSFEACMLETGKGSGGNATIDWFAVQGSHP 115
>SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +1
Query: 538 CGVNSNLDWYKHRS-SYPPACCGRASNEKRGERCDFPLYPTGCLRP 672
C + NLD K S C + GE C+ L+P+ C RP
Sbjct: 628 CNCSGNLDLTKPNSCDAVTGKCYKCLPNVTGEHCEKCLFPSNCTRP 673
>SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025)
Length = 2182
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 656 VGYKGKSHLSPRFSLEARPQHAGGYELRCLYQSKL 552
V + S RFSL +P AG Y L C + SK+
Sbjct: 651 VEVRPSSQKKSRFSLITKPAVAGEYSLECSFGSKV 685
>SB_47462| Best HMM Match : Ras (HMM E-Value=0)
Length = 385
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Frame = +1
Query: 478 DAIDPAVRSSFAAMQLELKCCGVNSNLDWY--------KHRSSYPPACC 600
D + + ++ MQ LKCCG + DW+ S P +CC
Sbjct: 263 DYPEQGFKDAWNDMQKNLKCCGSRNYTDWFMVAWAGPNTKNGSVPESCC 311
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,968,449
Number of Sequences: 59808
Number of extensions: 494468
Number of successful extensions: 1403
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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