Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10b21
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z67734-1|CAA91527.2| 279|Caenorhabditis elegans Hypothetical pr... 35 0.054
U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin fam... 33 0.22
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 31 0.87
Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z81086-1|CAB03120.2| 258|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z82272-8|CAB05223.1| 337|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z82260-13|CAB05143.1| 337|Caenorhabditis elegans Hypothetical p... 28 8.1
Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical pr... 28 8.1
U97000-10|AAC47997.1| 530|Caenorhabditis elegans Hypothetical p... 28 8.1
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 28 8.1
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 28 8.1
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 28 8.1
AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassi... 28 8.1
AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative pota... 28 8.1
>Z67734-1|CAA91527.2| 279|Caenorhabditis elegans Hypothetical
protein B0198.1 protein.
Length = 279
Score = 35.1 bits (77), Expect = 0.054
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 19/116 (16%)
Frame = +1
Query: 445 LNASMAQAMMLDA-IDPAVRSSFAAMQLELKCCGVNSNLDWYK---------------HR 576
LNAS+ ++ + +DP + + +Q + KCCG N+ DW K R
Sbjct: 128 LNASLPNDILNNYNLDPNIAKAVNYLQRDSKCCGSNAFNDWPKPEVEDHYLPYAKTVVQR 187
Query: 577 SSYPPACCGRASNEKRG-ERCDFP--LYPTGCLRPALIQLRNYVNSLSALASAMIV 735
Y P C +++++++G D P ++ GCL ++ N +N L + +A +V
Sbjct: 188 VQYIPDSCCKSTHQRKGCALSDSPNNIFYRGCLPFLKEEVYNNLNFLFTVTAASLV 243
>U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin family
protein 11 protein.
Length = 317
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 9/44 (20%)
Frame = +1
Query: 496 VRSSFAAMQLELKCCGVNS------NLDWYK--H-RSSYPPACC 600
V++++ + +E CCGV+S N WY+ H R +PPACC
Sbjct: 173 VKTAWDKIMIEKSCCGVDSKIGEFNNSGWYQLNHGRYQFPPACC 216
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 496 VRSSFAAMQLELKCCGVNSNLDWYKHRSSYPPACCGRASNEKRG-ERCDFPLYPTGCL 666
V S++ +CCGV ++ DW ++ P +CC E G R + PL+ GC+
Sbjct: 131 VESAWDKTHQLFECCGVTNSSDWLTF-TTIPDSCC---IEEIEGCARENAPLFEPGCI 184
>Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical
protein F33C8.3 protein.
Length = 282
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 487 DPAVRSSFAAMQLELKCCGVNSNLDWYKHRSSYPPACCGRASNEKRG 627
+ A + +F +Q + +CCGV + DW R P+ + E G
Sbjct: 133 ETAFKDAFDTVQEKFECCGVKTYTDWLSARWDAEPSTQLEVNEEDAG 179
>Z81086-1|CAB03120.2| 258|Caenorhabditis elegans Hypothetical
protein F53B6.1 protein.
Length = 258
Score = 29.9 bits (64), Expect = 2.0
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 17/91 (18%)
Frame = +1
Query: 496 VRSSFAAMQLELKCCGVN--------SNLDWYKHRSS----YPPACCGRASNEK-RGERC 636
+ S+ A+Q KCCGVN WY H+ + P +CC + E+ R
Sbjct: 144 ITESWDALQSNFKCCGVNGTDNAQIWKTSKWYMHQRAPKLLIPESCCIPSEIERCRSNPF 203
Query: 637 DF----PLYPTGCLRPALIQLRNYVNSLSAL 717
D P Y + C P L + +N S L
Sbjct: 204 DQDAPPPYYTSTCYEPLQNDLLHVMNVASWL 234
>Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical
protein C17G1.8 protein.
Length = 291
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 517 MQLELKCCGVNSNLDWY 567
+Q EL+CCGV++ DW+
Sbjct: 140 LQRELQCCGVDNYTDWH 156
>Z82272-8|CAB05223.1| 337|Caenorhabditis elegans Hypothetical
protein F55G11.1 protein.
Length = 337
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = -2
Query: 137 ANKTKPLLLMLTISVTKYFL*FLNCITYKSYSEYLE 30
+++T+ + ++TI KY+L + CI Y S +++
Sbjct: 130 SSRTRQIFRVVTIGKNKYWLALIGCIGYSVLSAFIQ 165
>Z82260-13|CAB05143.1| 337|Caenorhabditis elegans Hypothetical
protein F55G11.1 protein.
Length = 337
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = -2
Query: 137 ANKTKPLLLMLTISVTKYFL*FLNCITYKSYSEYLE 30
+++T+ + ++TI KY+L + CI Y S +++
Sbjct: 130 SSRTRQIFRVVTIGKNKYWLALIGCIGYSVLSAFIQ 165
>Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical protein
F08B12.3c protein.
Length = 1086
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 250 KIAPRRGLRSKSNTTSGTDSTLQI 179
+I PRRGLR N + DST Q+
Sbjct: 1053 RINPRRGLRRSKNVSETIDSTNQV 1076
>Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical protein
F08B12.3b protein.
Length = 1107
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 250 KIAPRRGLRSKSNTTSGTDSTLQI 179
+I PRRGLR N + DST Q+
Sbjct: 1074 RINPRRGLRRSKNVSETIDSTNQV 1097
>Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical protein
F08B12.3a protein.
Length = 1119
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 250 KIAPRRGLRSKSNTTSGTDSTLQI 179
+I PRRGLR N + DST Q+
Sbjct: 1086 RINPRRGLRRSKNVSETIDSTNQV 1109
>U97000-10|AAC47997.1| 530|Caenorhabditis elegans Hypothetical
protein F21F8.11 protein.
Length = 530
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -2
Query: 149 SPAHANKTKPLLLMLTISVTKYFL*FLNCITYKSYSEYLEYFSSTFFDL 3
SP+ K M+ ISV+ +FL ++NC T Y+ L S FF L
Sbjct: 377 SPSATVKLSQFASMMGISVSCFFLRYMNCAT-PFYALVLLSSVSAFFGL 424
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = -3
Query: 712 PTASSHSSVAE*GRDASNPSGTRENHTFPRAFH*KHVRSTPEDTSFGAYTNPS*NSLRST 533
PT SS S++ G AS+P+G+ TF A + P +S G + S S S
Sbjct: 424 PTGSSQSTITPEGSTASSPTGS-TGSTFSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSL 482
Query: 532 S 530
S
Sbjct: 483 S 483
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = -3
Query: 712 PTASSHSSVAE*GRDASNPSGTRENHTFPRAFH*KHVRSTPEDTSFGAYTNPS*NSLRST 533
PT SS S++ G AS+P+G+ TF A + P +S G + S S S
Sbjct: 631 PTGSSQSTITPEGSTASSPTGS-TGSTFSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSL 689
Query: 532 S 530
S
Sbjct: 690 S 690
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = -3
Query: 712 PTASSHSSVAE*GRDASNPSGTRENHTFPRAFH*KHVRSTPEDTSFGAYTNPS*NSLRST 533
PT SS S++ G AS+P+G+ TF A + P +S G + S S S
Sbjct: 631 PTGSSQSTITPEGSTASSPTGS-TGSTFSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSL 689
Query: 532 S 530
S
Sbjct: 690 S 690
>AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassium
channel protein.
Length = 1107
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 250 KIAPRRGLRSKSNTTSGTDSTLQI 179
+I PRRGLR N + DST Q+
Sbjct: 1074 RINPRRGLRRSKNVSETIDSTNQV 1097
>AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative potassium
channel Slo-2 protein.
Length = 1119
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 250 KIAPRRGLRSKSNTTSGTDSTLQI 179
+I PRRGLR N + DST Q+
Sbjct: 1086 RINPRRGLRRSKNVSETIDSTNQV 1109
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,674,416
Number of Sequences: 27780
Number of extensions: 354120
Number of successful extensions: 1130
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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