Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10b19
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_1037 - 10536547-10536585,10536814-10537102,10537202-105373... 32 0.46
08_02_0194 + 14084828-14085025,14085116-14085788,14085855-140870... 29 2.5
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 29 3.3
01_03_0050 + 11959421-11959736,11959892-11959960,11960641-119609... 28 5.7
04_03_0739 + 19180048-19182039 28 7.5
12_01_0919 - 9086879-9087064,9087842-9087923,9088357-9089553,908... 27 9.9
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419... 27 9.9
03_05_0665 + 26554362-26554796 27 9.9
03_03_0200 - 15396187-15396246,15396345-15396566,15396645-153971... 27 9.9
02_01_0244 + 1603381-1603792,1604054-1604132,1604993-1605862,160... 27 9.9
>08_01_1037 -
10536547-10536585,10536814-10537102,10537202-10537327,
10537336-10538291,10538379-10538825,10538904-10539632
Length = 861
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = +2
Query: 236 GNSDPRSPTPEITRTPLQGKNGAKHNITKNIDLRKTFESTNGDEKLIHNNPILSAVIKNH 415
G P+ PTP + P Q ++ +++ D + T D K IH P + K H
Sbjct: 490 GGRLPKRPTPAPSAPPAQDRHAQSYDVQLQYDTDFGEDRTEADSKAIHEPPPMKKSRKAH 549
>08_02_0194 +
14084828-14085025,14085116-14085788,14085855-14087082,
14087435-14087686,14087767-14087877,14087967-14088048,
14088323-14088514
Length = 911
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +2
Query: 401 VIKNHLQSYDPRSPTQDFERTPIIISSKINDLTNDTENLRLISDSCTSPITSKDKDNSCE 580
+I L +YDP+ +D E+ + S + E ++SDS S + ++D+ SC
Sbjct: 645 IIPKLLSTYDPKEIDKDKEK---FMFSAFRNSEKRKELAHVLSDSQKSVLAAQDEVQSCM 701
Query: 581 TYMEA 595
+ EA
Sbjct: 702 QFHEA 706
>03_02_0234 +
6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/16 (75%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
Frame = -1
Query: 438 DRGSY-DCKWFFITAD 394
DRGSY C+WFF TAD
Sbjct: 317 DRGSYFSCQWFFRTAD 332
>01_03_0050 +
11959421-11959736,11959892-11959960,11960641-11960979,
11961090-11961152,11962472-11962962,11963773-11964441
Length = 648
Score = 28.3 bits (60), Expect = 5.7
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 6/155 (3%)
Frame = +2
Query: 164 NNKMGSNSS--KPTDTSLVLKTELELGNSDPRS-PTPEITRTPLQGKNGAKHNITKNIDL 334
N ++GSNSS + T TS + E + + RS P + + P+ K A ++
Sbjct: 467 NLRVGSNSSPVEVTSTSAPFRVENASVSLEARSTPGQVVKQEPVFEKPPALKHVYSGKRR 526
Query: 335 RKT-FESTNGDEKLIHNNPILSAV--IKNHLQSYDPRSPTQDFERTPIIISSKINDLTND 505
RK + +G + + S K +S P + E T K T+
Sbjct: 527 RKLKMKEGSGPVSGLTQSKEASKTPATKKKTESTSPAAKKLKIEETTAPDEGKKAVKTHS 586
Query: 506 TENLRLISDSCTSPITSKDKDNSCETYMEAKEFSP 610
T R SC+S + +++SC + E +P
Sbjct: 587 TGKKRKAGKSCSSTKNQEAENSSCAARKDISESTP 621
>04_03_0739 + 19180048-19182039
Length = 663
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 263 PEITRTPLQGKNGAKHNIT--KNIDLRKTFESTNGDEKLIHNNPILSAVIKNHLQSYD 430
P TR P+ + GA + + +R FE G IH S VI+NHL ++
Sbjct: 75 PVRTRAPMGQRKGADIVVEALERCGVRDVFEYPGGASMEIHQALTRSPVIRNHLLRHE 132
>12_01_0919 -
9086879-9087064,9087842-9087923,9088357-9089553,
9089598-9089961,9090086-9090188,9090234-9090479
Length = 725
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 479 SKINDLTNDTENLRLISDSCTSPITSKDKDNSCETYMEAKEFSPDLISPK 628
S ND+ ++ + L SD C SP S + + + K++ P P+
Sbjct: 35 SSDNDIADEDDEYSLPSDPCPSPSPSPKRRKKVDDEEDDKDYIPPKEGPE 84
>09_03_0111 -
12440818-12441129,12441242-12441585,12441663-12441989,
12443444-12443602,12443687-12443784,12444745-12444821
Length = 438
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 432 GSYDCKWFFITADRMGLLCINFSSPFVDSNVFLRSIFFVMLCLAPFFPC 286
GS+DC + + + G N S F +V S+ FV+L +A F C
Sbjct: 80 GSFDCSCYPGSYMKNGFCLPNQKSTFPARHVIGASVGFVILVIAITFAC 128
>03_05_0665 + 26554362-26554796
Length = 144
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 194 PTDTSLVLKTELELGNSDPRSPTPEITRTPLQGKNGAKHNITKNI 328
PT T V T L L +S +PT TPL G +H+ +N+
Sbjct: 39 PTATPPVGATHLPLISSLHTAPTLTTIATPLVGAQHTRHHAAQNL 83
>03_03_0200 -
15396187-15396246,15396345-15396566,15396645-15397102,
15397183-15397645
Length = 400
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 152 LDYINNKMGSNSSKPTDTSLVLKTELELGNSDP-RSPT 262
+D + +G + P D+ LVL TE ELG DP RSPT
Sbjct: 132 VDCMRRLLGESFGFPADSILVL-TE-ELGEGDPSRSPT 167
>02_01_0244 +
1603381-1603792,1604054-1604132,1604993-1605862,
1606019-1606276,1606675-1606834
Length = 592
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 482 KINDLTNDTENLRLISDSCTSPITSKDKDNS 574
K ++L ND E L L+ C+SPI S +S
Sbjct: 395 KASNLVNDVEWLELLCAHCSSPIGSYPSQHS 425
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,477,517
Number of Sequences: 37544
Number of extensions: 270232
Number of successful extensions: 706
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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