Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b17
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50737| Best HMM Match : PKD (HMM E-Value=0.033)                     32   0.43 
SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_32172| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_4030| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  

>SB_50737| Best HMM Match : PKD (HMM E-Value=0.033)
          Length = 248

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 273 NILFHIEPLSTKLGYTIAQRYLQYLLSFQLIYLLSININTQ 151
           NIL +IEPL T +  TI+ ++  Y+LS    Y    +++ Q
Sbjct: 124 NILVYIEPLLTGVNLTISGKHEPYVLSTMTTYTFKAHVSPQ 164


>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2484

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 249  LSTKLGYTIAQRYLQYLLSFQLIYLLSININTQQPKWFFRTFQLNKIYYV 100
            L   L Y +    L Y+L   LIY+L +N+    P       Q+N IY +
Sbjct: 1852 LQVNLSYVLHLN-LSYVLQVNLIYVLQVNLIYVLPVNHIYVLQVNHIYVI 1900


>SB_32172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 596 GEKQSANQTRKCSNDNRHSLECHTIF*NTDS 504
           G+K   + TRKC ND+R   +  TI    D+
Sbjct: 96  GQKIRVSSTRKCENDDRKRNDLKTIMLRVDA 126


>SB_4030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
 Frame = -1

Query: 500 KETYFIKKKYTCH-YGTVLQIEPHPNLRITINLPKNV---PMTF*TTVKLNIRLATPKLS 333
           +ET  ++ + +CH YG V   +  P+      +P+ +   P T   +  L  ++    LS
Sbjct: 610 QETVAVRLRGSCHRYGMVAMEDISPD-ECLFKVPRGLLLEPKTCGISKILTGKVIQNMLS 668

Query: 332 INQNSTSHNLLLLKHISAPIIFY 264
            ++    H+L L KH++A I+ Y
Sbjct: 669 QHEGLKRHSLSLYKHMAAFIMAY 691


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,984,513
Number of Sequences: 59808
Number of extensions: 457454
Number of successful extensions: 896
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)