Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b16
         (400 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   4.5  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   4.5  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   4.5  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 242 YVATLVFSIFFGTGFWAPFIILWY 313
           +   +VF +FF  G  +P   L Y
Sbjct: 136 FAGLIVFILFFAQGLTSPIFNLVY 159


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 98  LRALFANAFRGKSYVGKAQESLRLQNRHHHDEGPP 202
           + + +A   +G + +G  Q+    Q  HHH   PP
Sbjct: 25  MHSWYAGYHQG-AQMGPEQQMWEPQMWHHHSHMPP 58


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 98  LRALFANAFRGKSYVGKAQESLRLQNRHHHDEGPP 202
           + + +A   +G + +G  Q+    Q  HHH   PP
Sbjct: 25  MHSWYAGYHQG-AQMGPEQQMWEPQMWHHHSHMPP 58


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,273
Number of Sequences: 336
Number of extensions: 1838
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)