Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10b16
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0654 - 12662931-12663200,12663296-12663550,12664097-126642... 29 1.8
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549... 28 2.4
01_06_0239 - 27791301-27791717,27793526-27793585,27793774-27793959 27 4.1
01_03_0184 + 13560830-13562981,13563604-13564088 27 4.1
08_02_0038 + 11497286-11497876 27 5.5
12_02_0712 + 22426945-22426981,22427517-22427623,22427707-224279... 27 7.2
11_01_0446 + 3462820-3464265 27 7.2
12_01_0730 + 6505759-6508806 26 9.5
12_01_0708 - 6137865-6140909 26 9.5
07_01_0802 - 6287180-6287605 26 9.5
07_01_0117 + 894314-896677 26 9.5
07_01_0116 - 855122-855352,856733-857059,857095-858481,858636-85... 26 9.5
01_06_1086 - 34421837-34422311,34422426-34422612,34423162-344232... 26 9.5
>02_02_0654 -
12662931-12663200,12663296-12663550,12664097-12664268,
12664354-12664581,12664727-12664860,12665018-12665101,
12665332-12665538,12665641-12665973,12666175-12666281,
12666439-12666593,12666778-12666810,12666924-12666972,
12667152-12667312,12667413-12668313,12668391-12668481,
12668558-12668749
Length = 1123
Score = 28.7 bits (61), Expect = 1.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 239 RYVATLVFSIFFGTGFW 289
RY+ T ++ +FFGT FW
Sbjct: 870 RYLTTFLYGLFFGTVFW 886
>07_03_0635 + 20151861-20152249,20152589-20152709,20154914-20154996,
20155819-20155903,20155987-20156277,20156555-20156645,
20157380-20158280,20158401-20158561,20158759-20158862,
20159040-20159205,20159283-20159378,20159694-20159800,
20160443-20160775,20161393-20161599,20161774-20161857,
20162887-20163020,20163166-20163393,20163541-20163712,
20164301-20164555,20164647-20164919
Length = 1426
Score = 28.3 bits (60), Expect = 2.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 239 RYVATLVFSIFFGTGFW 289
RYV TL++ + FGT FW
Sbjct: 1172 RYVMTLLYGLVFGTVFW 1188
>01_06_0239 - 27791301-27791717,27793526-27793585,27793774-27793959
Length = 220
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -3
Query: 224 KANYRTVEVVPRRGDVDSEASMIPALCRHSSCHGKH 117
+A+ R+ +GD DS M+ + C + C G+H
Sbjct: 12 RASSRSTACPHTKGDSDSGKHMLTSTCMYLVCDGRH 47
>01_03_0184 + 13560830-13562981,13563604-13564088
Length = 878
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 235 KSICSNISIFNLLRNRFLGTIYHIVVLHGKEIVVNSI 345
K +C + S+F LLR RF +VV G EI N +
Sbjct: 279 KDLCLSFSLFKLLRRRFARC---VVVEEGSEIGPNMV 312
>08_02_0038 + 11497286-11497876
Length = 196
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 128 GKSYVGKAQESLRLQNRHHH 187
G+S+VG+ E RL R HH
Sbjct: 43 GRSFVGEGNEESRLLRRRHH 62
>12_02_0712 +
22426945-22426981,22427517-22427623,22427707-22427955,
22429309-22429937,22430013-22430192,22430267-22430555,
22431183-22431247,22431379-22431471,22431811-22431897,
22431971-22432071,22432571-22432692
Length = 652
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -1
Query: 295 WCPKTCSEED*KY*CCYISICKFKRQIIERLRWSL 191
WC CS +D C + KF R +E W++
Sbjct: 459 WCHPYCSRQDPGTSTCGFYVMKFMRVFMEDGNWNI 493
>11_01_0446 + 3462820-3464265
Length = 481
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 232 YKSICSNISIFNLLRNRFLGTIYHIVVLHG-KEIVVNSI 345
+K +C + +++ LLR RF H G +++VV++I
Sbjct: 262 FKDVCLSFALYKLLRRRFFNFPIHEASHAGTRQLVVDAI 300
>12_01_0730 + 6505759-6508806
Length = 1015
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 247 SNISIFNLLRNRFLGTIYHIVVLHGKEIVVN 339
SN+++ L RN+F G+ I+ H K +N
Sbjct: 290 SNLTVLQLSRNKFQGSFPPIIFQHKKLRTIN 320
>12_01_0708 - 6137865-6140909
Length = 1014
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 247 SNISIFNLLRNRFLGTIYHIVVLHGKEIVVN 339
SN+++ L +N+F G I+ H K + +N
Sbjct: 291 SNLTVLQLSKNKFEGLFPPIIFQHKKLVTIN 321
>07_01_0802 - 6287180-6287605
Length = 141
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -3
Query: 224 KANYRTVEVVP--RRGDVDSEASMIPALC 144
+A + EV P RRGD++ A+ +PA C
Sbjct: 88 EAGHPMAEVFPGCRRGDLERAAASLPAFC 116
>07_01_0117 + 894314-896677
Length = 787
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 232 YKSICSNISIFNLLRNRFLG 291
YK IC + S+ +LL+ RF G
Sbjct: 236 YKDICLSFSLCHLLQRRFFG 255
>07_01_0116 -
855122-855352,856733-857059,857095-858481,858636-858895
Length = 734
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 235 KSICSNISIFNLLRNRFLG 291
K C + S+F+LLR RF G
Sbjct: 180 KDACLSFSLFHLLRRRFFG 198
>01_06_1086 -
34421837-34422311,34422426-34422612,34423162-34423291,
34423485-34423720,34423804-34423961,34424048-34424128,
34424216-34424281,34424364-34424432,34424722-34424866,
34425645-34426138,34426244-34426811,34429529-34429574
Length = 884
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/72 (22%), Positives = 32/72 (44%)
Frame = +1
Query: 121 FPWQELCRQSAGIIEASESTSPRRGTTSTVR*FAF*IYKSICSNISIFNLLRNRFLGTIY 300
F W C+ + + S R F + ++I +N +++ N GT+Y
Sbjct: 535 FLWMLCCKGKPKEHDDYDMYEEENPLHSDTRRFTYTELRTITNNFQ--SIIGNGGFGTVY 592
Query: 301 HIVVLHGKEIVV 336
H ++ +G+E+ V
Sbjct: 593 HGILGNGEEVAV 604
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,299,155
Number of Sequences: 37544
Number of extensions: 169635
Number of successful extensions: 593
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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