Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b16
         (400 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64070.1 68414.m07258 disease resistance protein (TIR-NBS-LRR...    28   2.0  
At1g72180.1 68414.m08346 leucine-rich repeat transmembrane prote...    28   2.6  
At2g36380.1 68415.m04464 ABC transporter family protein related ...    27   3.5  
At2g41820.1 68415.m05168 leucine-rich repeat transmembrane prote...    27   4.6  
At1g73080.1 68414.m08450 leucine-rich repeat transmembrane prote...    27   4.6  
At4g25220.1 68417.m03629 transporter, putative similar to glycer...    27   6.1  
At1g66950.1 68414.m07612 ABC transporter family protein similar ...    27   6.1  

>At1g64070.1 68414.m07258 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 997

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +2

Query: 59  SLLDYNNYITMSRLRALFANAFRGKSYVGKAQESLRLQNRHHH 187
           SLLD +N     ++ A+   A  GKS +G+A  SL L NR HH
Sbjct: 199 SLLDLDN--DEVKMVAISGPAGIGKSTIGRALHSL-LSNRFHH 238


>At1g72180.1 68414.m08346 leucine-rich repeat transmembrane protein
           kinase, putative similar to GI:3641252 from [Malus x
           domestica] (Plant Mol. Biol. 40 (6), 945-957 (1999))
          Length = 977

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 244 CSNISIFNLLRNRFLGTIYHIVVLHGKEIV 333
           C N+ + NL  NR  GTI ++  L   EI+
Sbjct: 121 CKNLKVLNLTSNRLSGTIPNLSPLKSLEIL 150


>At2g36380.1 68415.m04464 ABC transporter family protein related to
           multi drug resistance proteins and P-glycoproteins
          Length = 1453

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 238 ICKFKRQIIERLRWSLVVVMSILKPQ*FLRFADIALATE 122
           ICKF RQ++     ++V+ +    P+ F  F DI L +E
Sbjct: 383 ICKFMRQLVHIADVTMVISLLQPAPETFELFDDIILLSE 421


>At2g41820.1 68415.m05168 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 890

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 238 SICSNISIFNLLRNRFLGTI 297
           S CSN+++ NL  N F GTI
Sbjct: 299 SKCSNLTLLNLAANGFAGTI 318


>At1g73080.1 68414.m08450 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor protein kinase
           GI:1389566 from [Arabidopsis thaliana]
          Length = 1123

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 244 CSNISIFNLLRNRFLGTI 297
           C N+S  NL RNRF G I
Sbjct: 529 CKNLSSINLSRNRFTGQI 546


>At4g25220.1 68417.m03629 transporter, putative similar to
           glycerol-3-phosphate transporter (glycerol 3-phosphate
           permease) [Homo sapiens] GI:7543982
          Length = 504

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 245 VATLVFSIFFGTGFWAPFIILWYSMA 322
           + T +F+  FG  FWA F   +Y +A
Sbjct: 122 IGTGLFTALFGVAFWANFHSFYYFLA 147


>At1g66950.1 68414.m07612 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]
          Length = 1454

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 238 ICKFKRQIIERLRWSLVVVMSILKPQ*FLRFADIALATE 122
           ICKF RQ++     ++++ +    P+ F  F DI L +E
Sbjct: 385 ICKFMRQLVHISDVTMIISLLQPAPETFELFDDIILLSE 423


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,899,927
Number of Sequences: 28952
Number of extensions: 147850
Number of successful extensions: 473
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)