Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10b15
(430 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.011
SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09) 35 0.025
SB_1610| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23
SB_45406| Best HMM Match : 7tm_2 (HMM E-Value=5.9) 31 0.41
SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1) 31 0.41
SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002) 31 0.54
SB_40674| Best HMM Match : Extensin_2 (HMM E-Value=0.19) 29 1.2
SB_1612| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_17109| Best HMM Match : LRR_1 (HMM E-Value=2.9e-10) 28 2.9
SB_13882| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.2e-13) 27 5.0
SB_15408| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_10635| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_5346| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 36.3 bits (80), Expect = 0.011
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 234 CVDGCYCDKGLVRSYSKGPCIEAGKCRDKKIEKILD 341
CV GCYC GL+ + G C+++ +C+ K K D
Sbjct: 1248 CVSGCYCPDGLI-MHDNGTCVQSMQCQCKHNNKYYD 1282
Score = 35.1 bits (77), Expect = 0.025
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 234 CVDGCYCDKGLVRSYSKGPCIEAGKC 311
CVDGC+C +G ++ +G C++ G+C
Sbjct: 787 CVDGCFCPEGKIQ--DRGKCVDPGQC 810
Score = 29.1 bits (62), Expect = 1.6
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 228 KHCVDGCYCDKGLVRSYSKGPCIEAGKC 311
+ CV+GCYC+K ++ C++ +C
Sbjct: 1154 RRCVEGCYCEKEGELMNNEHKCVDKTQC 1181
>SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09)
Length = 133
Score = 35.1 bits (77), Expect = 0.025
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 234 CVDGCYCDKGLVRSYSKGPCIEAGKC 311
CVDGC+C +G ++ +G C++ G+C
Sbjct: 88 CVDGCFCPEGKIQ--DRGKCVDPGQC 111
>SB_1610| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 519
Score = 31.9 bits (69), Expect = 0.23
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +3
Query: 153 QFYEEYTCWTSSSKMERTRTLSKKFKHCVDGCY 251
QFY E CW SS E+T + K CVD CY
Sbjct: 352 QFYGE--CW-SSKDAEKTYAMDGKSSRCVDKCY 381
>SB_45406| Best HMM Match : 7tm_2 (HMM E-Value=5.9)
Length = 225
Score = 31.1 bits (67), Expect = 0.41
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -2
Query: 165 LHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFPT 55
L R A TL LCR+ R P L+ + RR KR PT
Sbjct: 154 LRRHKRAPTLSLCRLRRHKRAPTLSLRRLRRHKRSPT 190
>SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 259
Score = 31.1 bits (67), Expect = 0.41
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -2
Query: 171 CTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
CT +R L C Y RCP LT R +RFP
Sbjct: 221 CTNYRKRRCPPLTWCTYYRKRRCPPLTKCTNYRKRRFP 258
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = -2
Query: 183 RSNTCTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
R CT +R L C Y RCP LT R +R P
Sbjct: 21 RLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTRCTNYRKRRCP 62
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 171 CTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
CT +R L C YL RCP LT +R P
Sbjct: 123 CTNYRKRRCPPLTRCTYYLKRRCPPLTKCTNYLKRRCP 160
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 171 CTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
CT + L C YL RCP LT R +R P
Sbjct: 137 CTYYLKRRCPPLTKCTNYLKRRCPPLTKCTNYRKRRCP 174
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 171 CTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
CT +R L C Y RCP LT R +R P
Sbjct: 11 CTNYRKRRCPRLTKCTNYRKRRCPPLTKCTNYRKRRCP 48
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 171 CTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
CT +R L C Y RCP LT R +R P
Sbjct: 39 CTNYRKRRCPPLTRCTNYRKRRCPPLTRCTNYRKRRCP 76
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 171 CTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
CT +R L C Y RCP LT R +R P
Sbjct: 53 CTNYRKRRCPPLTRCTNYRKRRCPPLTKCTNYRKRRCP 90
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 171 CTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
CT +R L C Y RCP LT R +R P
Sbjct: 67 CTNYRKRRCPPLTKCTNYRKRRCPPLTWCTNYRKRRCP 104
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 171 CTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
CT +R L C Y RCP LT R +R P
Sbjct: 81 CTNYRKRRCPPLTWCTNYRKRRCPPLTRCTNYRKRRCP 118
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 171 CTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
CT +R L C Y RCP LT R +R P
Sbjct: 95 CTNYRKRRCPPLTRCTNYRKRRCPPLTMCTNYRKRRCP 132
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 171 CTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
CT +R L C Y RCP LT R +R P
Sbjct: 165 CTNYRKRRCPPLTRCTNYRKRRCPPLTKCTNYRKRRCP 202
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 171 CTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
CT +R L C Y RCP LT R +R P
Sbjct: 179 CTNYRKRRCPPLTKCTNYRKRRCPPLTKCTNYRKRRCP 216
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 171 CTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
CT +R L C Y RCP LT R +R P
Sbjct: 193 CTNYRKRRCPPLTKCTNYRKRRCPPLTRCTNYRKRRCP 230
>SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
Length = 458
Score = 30.7 bits (66), Expect = 0.54
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -2
Query: 171 CTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
CT + L C YL RCP LT R KR+P
Sbjct: 266 CTYYLKRRCPPLTKCTNYLKRRCPPLTKRTNYRKKRYP 303
Score = 29.9 bits (64), Expect = 0.94
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -2
Query: 177 NTCTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
N CT +R L C Y RCP LT R +R P
Sbjct: 110 NKCTYYRKRRCPPLTRCTNYRKRRCPPLTKCTNYRKRRCP 149
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 171 CTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
CT +R L C Y RCP LT R +R P
Sbjct: 98 CTNYRKRRCPPLNKCTYYRKRRCPPLTRCTNYRKRRCP 135
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 171 CTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
CT +R L C Y RCP LT R +R P
Sbjct: 210 CTNYRKRRCPPLTKCTYYRKRRCPPLTKCTNYRKRRCP 247
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 171 CTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
CT +R L C Y RCP LT R +R P
Sbjct: 70 CTNYRKRRCPPLTWCTNYRKRRCPPLTRCTNYRKRRCP 107
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 171 CTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
CT +R L C Y RCP LT R +R P
Sbjct: 126 CTNYRKRRCPPLTKCTNYRKRRCPPLTKCTNYRKRRCP 163
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 171 CTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
CT +R L C Y RCP LT R +R P
Sbjct: 140 CTNYRKRRCPPLTKCTNYRKRRCPPLTKCTNYRKRRCP 177
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 171 CTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
CT +R L C Y RCP LT R +R P
Sbjct: 154 CTNYRKRRCPPLTKCTNYRKRRCPPLTKCTNYRKRRCP 191
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 171 CTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
CT +R L C Y RCP LT R +R P
Sbjct: 168 CTNYRKRRCPPLTKCTNYRKRRCPPLTKCTNYRKRRCP 205
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 171 CTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
CT +R L C Y RCP LT R +R P
Sbjct: 182 CTNYRKRRCPPLTKCTNYRKRRCPPLTRCTNYRKRRCP 219
>SB_40674| Best HMM Match : Extensin_2 (HMM E-Value=0.19)
Length = 291
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -2
Query: 177 NTCTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
N CT +R L C Y RCP LT R +R P
Sbjct: 172 NKCTYYRKRRCPPLTRCTNYRKRRCPPLTKCNYYRKRRCP 211
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 171 CTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
CT +R L C YL RCP LT +R P
Sbjct: 230 CTNYRKRRCPPLTRCTNYLKRRCPPLTKCTNYLKRRCP 267
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 171 CTLHRTDTACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
CT + L C YL RCP LT R +R P
Sbjct: 244 CTNYLKRRCPPLTKCTNYLKRRCPPLTKCTNYRKRRCP 281
>SB_1612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 153 QFYEEYTCWTSSSKMERTRTLSKKFKHCVDGCY 251
QFY E CW S E+T + K +C D CY
Sbjct: 167 QFYGE--CW-SGKDAEKTYAMDGKSSNCADKCY 196
>SB_17109| Best HMM Match : LRR_1 (HMM E-Value=2.9e-10)
Length = 390
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 331 KSLTIYRFIRKELNKFTSLYIHMPRLCFYIKK 426
KS T RF+ E N FT+ H+PRLC +KK
Sbjct: 323 KSATSLRFLLIEDNIFTAE--HVPRLCRMLKK 352
>SB_13882| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.2e-13)
Length = 340
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +3
Query: 96 IEGTALINKCGTNEVYKPCQFYEEYTCWTSSSKMERTRTLSKKFKHCVDGCYCDKGLVRS 275
++G ++C + Y+P Y + T W K + R + FK+C C G+ R+
Sbjct: 92 LQGATSKDQCRECKDYEPEDKYGDCTTWRQQMKCVKDRPM--MFKYCPKTC----GICRT 145
Query: 276 YSK 284
+ K
Sbjct: 146 WQK 148
>SB_15408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 27.1 bits (57), Expect = 6.6
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Frame = +3
Query: 99 EGTALINKCGTNEVYKPCQFYEEYTCWTSSSKMERTRTLSKKFK-HCVDG-----CYCDK 260
+G + +CG VY Y+ C S ++ S C++ C C +
Sbjct: 337 DGKRCVGRCG--RVYGVVCIYKRTLCCVDISDVDECTDESVCTNGQCINNIGSFTCTCRR 394
Query: 261 GLVRSYSKGPCIEAGKCRDKKIEK 332
G S + C + +CR+K + K
Sbjct: 395 GFTLSLDRTRCDDMDECREKDVCK 418
>SB_10635| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 150 TACTLRLCRIYLSMRCPQLT*MQTRRTKRFP 58
T L C Y RCP LT R +RFP
Sbjct: 65 TMSPLTWCTYYRKRRCPPLTKGNYYRKRRFP 95
>SB_5346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 485
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 39 CKMKVLWGIVLFSSFASKLIEGTALINKCGTNEVYKPCQF 158
C M ++G V FS+ + G A ++ CG VY F
Sbjct: 362 CGMMSVYGDVHFSTCGMMSVYGNAHLSTCGMMSVYGNAHF 401
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,824,524
Number of Sequences: 59808
Number of extensions: 241491
Number of successful extensions: 800
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -