Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b14
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    27   1.6  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    27   2.8  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    27   2.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.0  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   6.6  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    25   6.6  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   6.6  

>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 193 LKSYKIFTVSIFLHKQLITFFSKCAIKDFH 104
           L+ +   T ++   KQ+I FFS   + +FH
Sbjct: 524 LRDFSDLTTTVLTQKQVIPFFSSMELANFH 553


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +1

Query: 208  VLNLCSEKKLFVSSDS*LKLRSCRRFWKPLSANTALRAK*IHQLTTCQLP 357
            ++NLC+E  +F      L  RS    W  +  ++A R   + Q+    +P
Sbjct: 927  IINLCNENSMFKQLARYLLKRSDSNLWSEVLQDSAYRRPLLDQVIATAVP 976


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -2

Query: 370 LGTNMATGMSSIDGFTSPLAPYLRSRASKSDGMTAAL-IKNHWKQRVFFLNINSILKLFR 194
           +  N     SS D FTS L  +  +  S  +GM+  + ++  W Q V   N   ++K  +
Sbjct: 259 ISLNNGRNQSSSDFFTSSLTDHAFNPHSSPNGMSNVIALQTTWNQMVKEYNRIMLIKTAK 318

Query: 193 LK-SYKIF 173
              SY+++
Sbjct: 319 ASGSYRLY 326


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/37 (29%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
 Frame = -2

Query: 256  KNHWKQRVFFLNINSILKLFRLKSYKI---FTVSIFL 155
            +N+WK+   FLN+NS+  L + + +++   +++S++L
Sbjct: 1051 QNYWKKVEPFLNLNSLNLLLKSELFQLDQCYSLSLYL 1087


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/61 (21%), Positives = 24/61 (39%)
 Frame = -2

Query: 253 NHWKQRVFFLNINSILKLFRLKSYKIFTVSIFLHKQLITFFSKCAIKDFHTVSKTHCYFL 74
           N W  R+   +I +I+  F L  YK     +    + +   +   + D H       YF+
Sbjct: 778 NSWHSRLELDSILAIISQFSLPVYKKMNEELSTTDEAVKLLANSVLNDVHPRVPNFRYFI 837

Query: 73  F 71
           +
Sbjct: 838 W 838


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +3

Query: 468 DVVELDLANNKLTEWQEVFAILEQTPRVRFLNLSFNRLSA 587
           DV+ + L++N L     V  + +  P++  L+L+ NR+++
Sbjct: 215 DVISVSLSDNNLQSVTAVTTLAQTWPKLLNLSLANNRITS 254


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +3

Query: 471 VVELDLANNKLTEWQEVFAILEQTPRVRFLNLSFNRLS 584
           +V LDL+ N+LT   E+   L + P++  LNL+ N+++
Sbjct: 358 LVSLDLSGNELT---EIPYALGELPQLCSLNLASNKIT 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,021
Number of Sequences: 5004
Number of extensions: 41767
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)