Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b14
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52815| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.42 
SB_47329| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_19554| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_48410| Best HMM Match : Lig_chan (HMM E-Value=3.5e-05)              28   6.9  
SB_3225| Best HMM Match : PKD (HMM E-Value=8.5e-09)                    28   6.9  
SB_1946| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  

>SB_52815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 462 CADVVELDLANNKLTEWQEVFAILEQTPRVRFLNLS 569
           C DV  LD++NN+L +      +  Q P ++ LNLS
Sbjct: 279 CPDVESLDVSNNRLFQLDHFKDLATQAPGIKCLNLS 314


>SB_47329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 432

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 462 CADVVELDLANNKLTEWQE 518
           C +V ELDL  NK+++W+E
Sbjct: 74  CPNVEELDLHTNKISDWRE 92


>SB_19554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 26/75 (34%), Positives = 35/75 (46%)
 Frame = +3

Query: 171 VKILYDFNLNSLSIEFMFRKKTLCFQ*FLIKAAVMPSLLEALERKYGAKGEVNPSIDDMP 350
           VK +   NLN  S       KTL       KA V+   +E LERK  A+     S++D  
Sbjct: 54  VKAINHVNLNPCS-------KTLARDKVRAKAEVLSIKIEELERKLAAE-RTKLSLEDKE 105

Query: 351 VAIFVPKRSPRLSVP 395
           +A F PK  P ++ P
Sbjct: 106 MAPFPPK--PTVATP 118


>SB_48410| Best HMM Match : Lig_chan (HMM E-Value=3.5e-05)
          Length = 1084

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = -2

Query: 223 NINSILKLFRLKSYKIFTVSIFLHKQLITFFSKCAIKDFHTVSKT 89
           N+N+ L+  ++ S K F + +FL   +I    + AI +FH++ KT
Sbjct: 175 NLNNALQ--KIDSNKDFVLVVFLESSIIDRALRDAIYNFHSLVKT 217


>SB_3225| Best HMM Match : PKD (HMM E-Value=8.5e-09)
          Length = 1080

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 477 ELDLANNKLTEWQEVFAILEQTPRVRFLNLSFNRLSAQI 593
           ELD  N    EW+E FA        R LN++  RL   +
Sbjct: 784 ELDKENKGTVEWREYFARRLLAELTRILNVASQRLEVAV 822


>SB_1946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 672

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +3

Query: 480 LDLANNKLTEWQEVFAILEQTPRVRFLNLSFNRL 581
           +DL+ N L+ W  + +  +    ++ +NLS N++
Sbjct: 475 IDLSRNNLSNWTRMTSTFDGLKSIKHINLSANKM 508


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,405,044
Number of Sequences: 59808
Number of extensions: 284911
Number of successful extensions: 640
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)