Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b14
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.11 
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   4.1  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   4.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 462 CADVVELDLANNKLTEWQEVFAILEQTPRVRFLNLSFNRLS 584
           C+D+ ELDL+ N+LT   +    L     ++ L+L  NR+S
Sbjct: 430 CSDLKELDLSGNELTSVPDA---LRDLALLKTLDLGENRIS 467



 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 465 ADVVELDLANNKLTEWQEVFAILE 536
           AD+  LDL+ N++T  QE   +L+
Sbjct: 212 ADIRILDLSRNEITRLQENSPLLD 235


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 244 KQRVFFLNINSILKLFRLKSYKIFTVSIFLHKQLITFFS 128
           K +++  N N IL +      K+F     L +  ITFFS
Sbjct: 90  KLKIYKWN-NQILHILWTSYKKVFMKDNILRQYFITFFS 127


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 244 KQRVFFLNINSILKLFRLKSYKIFTVSIFLHKQLITFFS 128
           K +++  N N IL +      K+F     L +  ITFFS
Sbjct: 73  KLKIYKWN-NQILHILWTSYKKVFMKDNILRQYFITFFS 110


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = -2

Query: 328 FTSPLAPYLRSRASKSDGMTAALIKNHWKQRVFFLN 221
           +T P   + +    ++  + +  IKN W    FF+N
Sbjct: 67  WTDPRLAFKKRTGVETLSVGSEFIKNIWVPDTFFVN 102


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = -2

Query: 328 FTSPLAPYLRSRASKSDGMTAALIKNHWKQRVFFLN 221
           +T P   + +    ++  + +  IKN W    FF+N
Sbjct: 67  WTDPRLAFKKRTGVETLSVGSEFIKNIWVPDTFFVN 102


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 54  SWKYSGHTINL 22
           SW Y G+T++L
Sbjct: 165 SWTYDGYTVDL 175


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = -2

Query: 328 FTSPLAPYLRSRASKSDGMTAALIKNHWKQRVFFLN 221
           +T P   + +    ++  + +  IKN W    FF+N
Sbjct: 6   WTDPRLAFKKRTGVETLSVGSEFIKNIWVPDTFFVN 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,499
Number of Sequences: 438
Number of extensions: 2465
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)