Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b13
         (562 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   2.4  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 100 VHVLFMC*LFYILLIYCF 47
           +H+LF C L  +L IY F
Sbjct: 224 IHLLFYCVLIILLCIYYF 241



 Score = 22.2 bits (45), Expect = 3.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 112 MFSNVHVLFMC*LFYILLIYCF*TCRT*FIYTTF 11
           +F N+H+LF+  L Y  L   F  C   + Y+ F
Sbjct: 187 IFFNMHLLFLLCLDYFTLHLLFLPC-IYYFYSAF 219


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +3

Query: 315 EQDPYCPKSITIVKETVSQEVHKHENCESDKEVSAHRYVYKKEVIEPYLEP 467
           E+    PK   + +E   +  HK +  +S K+ + + Y    +VIE    P
Sbjct: 206 EKSASIPKKKEVKEEIEDEPDHKWKKNDSSKKKTRYYYRSVDDVIEKGKRP 256


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 381 KHENCESDKEVSAHRYVYKKEVIE 452
           +H+  E +KE   +RY+ ++  IE
Sbjct: 242 RHQILELEKEFHYNRYLTRRRRIE 265


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 381 KHENCESDKEVSAHRYVYKKEVIE 452
           +H+  E +KE   +RY+ ++  IE
Sbjct: 242 RHQILELEKEFHYNRYLTRRRRIE 265


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = -2

Query: 123 YNLTCSPMFMCCSCANYSTYC 61
           Y  TC P F   +C N    C
Sbjct: 45  YICTCKPGFTGSNCQNRINLC 65


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 381 KHENCESDKEVSAHRYVYKKEVIE 452
           +H+  E +KE   +RY+ ++  IE
Sbjct: 242 RHQILELEKEFHYNRYLTRRRRIE 265


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,541
Number of Sequences: 336
Number of extensions: 2583
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13786212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)