Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b13
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0087 - 31551825-31553363                                         31   0.48 
05_01_0193 + 1400963-1401083,1401671-1401888,1401983-1402172,140...    28   4.4  
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555...    24   4.9  
05_06_0260 + 26736631-26736771,26736850-26736981,26737066-267372...    27   7.7  

>03_06_0087 - 31551825-31553363
          Length = 512

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 419 GAHFFITLAVLVLVNL-LRYGFFDDSDGLRTVGILLDVTDLK 297
           G  F + +A L+LV L LRY  FD   G  T+G  + VT LK
Sbjct: 467 GKDFVVLVARLLLVELFLRYDSFDVEVGTSTLGSSVTVTSLK 508


>05_01_0193 +
           1400963-1401083,1401671-1401888,1401983-1402172,
           1402391-1402782,1402971-1403381
          Length = 443

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +3

Query: 345 TIVKETVSQEVHKHENCESDKEVSAHRYVYKKEVIEPYLEPDPSLDCKTKDE 500
           T+VK+  SQ     +N ESDK    H    K  V     EP   +    K E
Sbjct: 24  TVVKKASSQHGSSLKNSESDKSPRGHSNNKKSSVAAKNTEPPKRIPITAKAE 75


>11_04_0460 -
           17955102-17955146,17955253-17955310,17955442-17955593,
           17955888-17955993,17956101-17956222,17956766-17956834,
           17956969-17957214,17957331-17957373,17957449-17957520,
           17957954-17958066,17958158-17958238,17958343-17958415,
           17959413-17959519,17960410-17960514,17960684-17960974,
           17961621-17961707,17961774-17961842,17961917-17961973,
           17962057-17962155,17962223-17962312,17962395-17962511,
           17964164-17964244,17964353-17964502,17964812-17964956,
           17967359-17967510,17967647-17967784,17967838-17967914,
           17968032-17968134
          Length = 1015

 Score = 24.2 bits (50), Expect(2) = 4.9
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 465 PDPSLDCKTKDELVAAALHSAVKDFP 542
           P P  D    D LV A+LH   KDFP
Sbjct: 550 PVPVRDEGYVDALVRASLHFIRKDFP 575



 Score = 22.2 bits (45), Expect(2) = 4.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 447 IEPYLEPDPSLD 482
           IEP+L P+P LD
Sbjct: 516 IEPFLLPEPPLD 527


>05_06_0260 +
           26736631-26736771,26736850-26736981,26737066-26737248,
           26737344-26737370,26737482-26737689,26737863-26737944,
           26738097-26738205,26738324-26738443,26738567-26738884
          Length = 439

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 117 NYT*TCTLTMPTKNLSFEDCDTTSIYKAVEKGTQTSSTGLSRSS 248
           N T  CT     K L FEDC   S+     + +Q S    +R S
Sbjct: 149 NATENCTTQAAPKALHFEDCQGISVMGITLQNSQESHLTFTRCS 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,192,980
Number of Sequences: 37544
Number of extensions: 262677
Number of successful extensions: 707
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)