Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b13
         (562 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45177| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_1621| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.0  
SB_58975| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13)                27   7.9  
SB_21858| Best HMM Match : DUF983 (HMM E-Value=1.5)                    27   7.9  

>SB_45177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 863

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = +3

Query: 303 ICHVEQDPYCPKSITIVKETVSQEVHKHENCESDKEVSAHRYVYKKEVIEPYLEPDPSLD 482
           I ++EQDP   KS   +++T    V    + +  KE  A       E+I   +E DP+ D
Sbjct: 342 IKNIEQDPKSEKSYQALRDTTHDLVDGLRDFDQAKEEHAKLIPKYHEIIIKTIEQDPTSD 401

Query: 483 CKTKDELVA 509
            K+  EL A
Sbjct: 402 -KSYGELKA 409


>SB_1621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = -3

Query: 521 VERGRDQLVLGLAVQRRVGLE--VRFDDLLLVHVPVGAHFFITLAVLVLVNLLRYGFFDD 348
           +E+G+D+    LAV RRV  E  VR  ++      V     +    ++L  +L  GFF +
Sbjct: 105 IEQGKDEFQSELAVLRRVKHEFVVRLYEVFECKNRVYLVMELATGGVLLDRILSKGFFTE 164

Query: 347 SDGLRTVGILLD 312
            D  R + ++L+
Sbjct: 165 RDATRVIYMVLE 176


>SB_58975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -3

Query: 440 LLVHVPVGAHFFITLAVLVLVNLLRYGFFDDSDGLRTVGILLDVTDLK 297
           LLV + +GA  F  L V V+V  L +   D    ++T G   +V DLK
Sbjct: 437 LLVFIAIGAFVFANLVVAVVVTNLEFAMED----VKTEGKEREVDDLK 480


>SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13)
          Length = 310

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
 Frame = -3

Query: 416 AHFFITLAVLVLVNLLRYGFFDDS------DGLRTVGILLDVTDL-KH 294
           A+++IT AVL+LV+++   F  D+         RT G+LL   DL KH
Sbjct: 49  ANYYITPAVLILVSVVYVYFNADAPIIKARSSKRTEGVLLSTEDLAKH 96


>SB_21858| Best HMM Match : DUF983 (HMM E-Value=1.5)
          Length = 238

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 310 TSSRIPTVLSPSLSSKKPYRKRFTSTR 390
           TS+ IPT +SP  + KK Y+++   +R
Sbjct: 122 TSATIPTTVSPPSALKKSYKRQIFGSR 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,448,690
Number of Sequences: 59808
Number of extensions: 306869
Number of successful extensions: 823
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)