Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b11
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   2.8  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.7  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    25   8.7  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   8.7  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    25   8.7  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/57 (24%), Positives = 30/57 (52%)
 Frame = -3

Query: 716 EARTYLQILLNKHYYMN*DIRLKTNGLLNVILDSFKSVNKKTNMFNFCFKLC*HNDT 546
           E+R ++ + L++ YY   D +L    ++     SF+ ++ K     F F+L  H+++
Sbjct: 357 ESRLHILLQLSQLYYKYNDFQLSAAYVIRGYSLSFEDISFKLKFLLFSFRLSIHDNS 413


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 304  RIASITALAQGPVVDTHVLFGIQENAARWFFPVKPSLAQIHL 429
            RI  +TA  +   +D H+LF  +EN      P++P L  I L
Sbjct: 1068 RIRRMTAWPESDALDKHILF--KENIIP--IPIRPPLVDISL 1105


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 306 PLCKENHSSMVFLREHYWVLHNKPLFPSGVVAASVVHIEVFY 181
           P  +E + ++ FLR  YW L+N P F   +++   +   +FY
Sbjct: 296 PAVQEKYWNVGFLR--YWTLNNIPNFLFALLSIIPILFALFY 335


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 87  NSGKMSVLPRGIENCRPIARYGYVTAESSIYN 182
           N+   SV+P    +  P ARY  ++  +++Y+
Sbjct: 328 NNSNPSVIPESTSSREPAARYRKISERNAVYD 359


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -3

Query: 266 GNITGSSTISRCFPLVWLRPRLSTSRSFIVNATFSCYISIPCNWPTVFNTSWQ 108
           G ++GS+  +  FPL  +R RL T  +    AT+  +I   C + T  N  ++
Sbjct: 342 GALSGSTGATIVFPLNVIRTRLQTQGTSAHPATYDGFID--CFYKTTKNEGFR 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,328
Number of Sequences: 5004
Number of extensions: 61529
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)