Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10b11
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0242 - 15273774-15274043,15274131-15274235 32 0.42
02_03_0408 - 18692176-18692278,18692590-18692669,18692764-186928... 30 1.7
06_02_0038 + 10865068-10865150,10865249-10865335,10865835-108659... 30 2.2
04_04_1538 + 34239913-34241274,34241468-34241578 30 2.2
03_06_0599 + 34984869-34985319,34986581-34987563 30 2.2
03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621 29 3.0
02_05_0106 - 25877997-25878677,25878951-25879222,25879317-25879476 29 3.0
05_03_0148 + 8922959-8923855 28 6.9
01_01_0649 - 4939939-4940835 28 6.9
11_02_0018 - 7412309-7413328 28 9.1
11_02_0016 - 7380933-7382027 28 9.1
10_08_0364 + 17217631-17217833,17218134-17218308,17218391-172184... 28 9.1
09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664... 28 9.1
04_03_1041 - 21938347-21938529,21938618-21938773,21939291-219394... 28 9.1
03_01_0166 + 1362254-1363138,1363225-1363545 28 9.1
01_05_0648 + 23915469-23915898,23916551-23916619,23916956-239173... 28 9.1
>11_04_0242 - 15273774-15274043,15274131-15274235
Length = 124
Score = 32.3 bits (70), Expect = 0.42
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 243 CGGPSNVPLEKPCCYDFPCKADCFNHGACT 332
CGGP V + PCCY C G C+
Sbjct: 82 CGGPHGVCIPAPCCYAINCNIPNRPFGVCS 111
>02_03_0408 -
18692176-18692278,18692590-18692669,18692764-18692890,
18694016-18694051,18695832-18696085
Length = 199
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 240 YCGGPSNVPLEKPCCYDFPCKADCFNHGACTRPSGRYARTVWYP 371
Y G P VPL++ D P C GA S R T+++P
Sbjct: 50 YAGAPKGVPLQQTMFRDTPAPFHCQACGAAAVSSLRSEDTIFFP 93
>06_02_0038 +
10865068-10865150,10865249-10865335,10865835-10865936,
10867000-10870078
Length = 1116
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 531 LSTFLGIIMLTQLKTKIKHVCFFIHTFKR 617
L L + + TQLKTKI+HV H F R
Sbjct: 710 LHVLLSMALKTQLKTKIEHVPNLFHRFTR 738
>04_04_1538 + 34239913-34241274,34241468-34241578
Length = 490
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Frame = +3
Query: 180 NKRPRCGQPRPQPHQRETTAYCGGPSNVPLEKPCCYDFPCKADCFNHGACTRPSGRYART 359
N +P P P P Q+ C S P CC ++ + C G C +
Sbjct: 379 NPKPSPPSPAPSPPQQ-----CDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKD 433
Query: 360 VWYPGECCPVVFP-CQA 407
CCP +P C A
Sbjct: 434 ---HSTCCPKEYPVCNA 447
>03_06_0599 + 34984869-34985319,34986581-34987563
Length = 477
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/41 (43%), Positives = 20/41 (48%)
Frame = +3
Query: 204 PRPQPHQRETTAYCGGPSNVPLEKPCCYDFPCKADCFNHGA 326
P P PHQRET PS P +P FPC +C GA
Sbjct: 408 PPPPPHQRET------PSPSPPPQP---QFPCPGNCSRCGA 439
>03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621
Length = 388
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 204 PRPQPHQRETTAYCGGPSNVPLEK 275
P P+ H R T +Y G P PLEK
Sbjct: 180 PPPEAHHRPTKSYTGHPPPPPLEK 203
>02_05_0106 - 25877997-25878677,25878951-25879222,25879317-25879476
Length = 370
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +3
Query: 126 NCRPIARYGYVTAESSIYNKRPRCGQPRPQPHQRETTAYCGG 251
+C+P Y ++ + + P+ P+P P AY GG
Sbjct: 221 HCKPELEYHHLLPQEAFLQHLPQLESPKPPPPPPAAAAYIGG 262
>05_03_0148 + 8922959-8923855
Length = 298
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 123 ENCRPIARYGYVTAESSIYNKRPRCGQPRPQPHQRETTAY 242
EN + + +G + A+ I RP CG+ P P ET +
Sbjct: 20 ENLKEMVAHGVLPAKE-IIGWRPACGEAFPTPDTHETVVF 58
>01_01_0649 - 4939939-4940835
Length = 298
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 123 ENCRPIARYGYVTAESSIYNKRPRCGQPRPQPHQRETTAY 242
EN + + +G + A+ I RP CG+ P P ET +
Sbjct: 20 ENLKEMVAHGVLPAKE-IIGWRPACGEAFPTPDTHETVVF 58
>11_02_0018 - 7412309-7413328
Length = 339
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +3
Query: 129 CRPIARYGYVTAESSIYNKRPRCGQPRPQPHQRETTAYCGGPSNVPL 269
CR IARY S Y + P P P + P+N PL
Sbjct: 109 CRRIARYAGAAVLSVDYRRSPEHRYPTPYDDGLAALRFLDDPNNHPL 155
>11_02_0016 - 7380933-7382027
Length = 364
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +3
Query: 129 CRPIARYGYVTAESSIYNKRPRCGQPRPQPHQRETTAYCGGPSNVPL 269
CR IARY S Y + P P P + P+N PL
Sbjct: 114 CRRIARYAGAAVLSVDYRRSPEHRYPTPYDDGLAALRFLDDPNNHPL 160
>10_08_0364 +
17217631-17217833,17218134-17218308,17218391-17218474,
17218561-17218802,17218883-17219108,17219246-17219325,
17219408-17219492,17219665-17219796,17219927-17220040,
17220123-17220170,17220413-17220497,17220722-17220834
Length = 528
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 405 LDREKPPGSILLDTKQYVRIDHWALCKRRD*SN 307
+ R+ P ++LLD ++R+ + LCK D SN
Sbjct: 233 IHRDIKPDNLLLDRHGHLRLSDFGLCKPLDYSN 265
>09_06_0328 +
22365308-22365415,22365743-22366018,22366166-22366417,
22366542-22366939,22367028-22368021,22368199-22368409,
22368515-22368749,22368874-22368996,22369190-22369310,
22369416-22369625
Length = 975
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +1
Query: 166 KVAFTIKDLDVDNRGRNH---TRGKQRLIVEDPVMFP*KNHAAMIFLAKRIASITALAQG 336
++ + ++D ++D +N RG+Q I E P + +A +K+++S+
Sbjct: 370 ELGYRLRDAELDELKKNRYGDVRGRQSNIAESPAQLLLEEASAKQSASKKVSSVQQFQSP 429
Query: 337 PVVDT 351
P V T
Sbjct: 430 PKVST 434
>04_03_1041 -
21938347-21938529,21938618-21938773,21939291-21939408,
21939536-21940203,21941773-21941802
Length = 384
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -2
Query: 252 VLHNKPLFPSGVVAASVVHIEVFYCKCYF--QLLHIHTLQLA 133
VLH + PS +V AS+ VF CKC F L ++ +L+L+
Sbjct: 227 VLHGPAVMPS-LVRASIRFSVVFPCKCNFLNVLFNVTSLELS 267
>03_01_0166 + 1362254-1363138,1363225-1363545
Length = 401
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 123 ENCRPIARYGYVTAESSIYNKRPRCGQPRPQPHQRETTAY 242
EN + I +G + A+ I RP CG+ P P E +
Sbjct: 20 ENLKEIVAHGVLPAKE-IIGWRPACGEAFPSPDTHEVVVF 58
>01_05_0648 +
23915469-23915898,23916551-23916619,23916956-23917315,
23918435-23918973
Length = 465
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/50 (36%), Positives = 18/50 (36%)
Frame = +3
Query: 246 GGPSNVPLEKPCCYDFPCKADCFNHGACTRPSGRYARTVWYPGECCPVVF 395
G S VP E PC A C H A P R A P E C F
Sbjct: 32 GAFSEVPPETPCAAAIVSVAPCLAHVAVVAPPARPAPA---PTEACCAAF 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,838,535
Number of Sequences: 37544
Number of extensions: 401030
Number of successful extensions: 1045
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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