Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10b11
(748 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_45852| Best HMM Match : I-set (HMM E-Value=0) 29 3.0
SB_20692| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_29595| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=1.90001e-40) 29 3.0
SB_28322| Best HMM Match : Ion_trans (HMM E-Value=1.6e-41) 29 4.0
SB_22683| Best HMM Match : UPAR_LY6 (HMM E-Value=2.6) 29 4.0
SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_27516| Best HMM Match : DUF827 (HMM E-Value=0.33) 29 5.3
SB_12094| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00041) 29 5.3
SB_47919| Best HMM Match : Uricase (HMM E-Value=8.2e-35) 28 9.2
SB_57054| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_36915| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 28 9.2
>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +3
Query: 177 YNKRPRCGQPRPQPHQRETTAYCGGPSNVPLEKPCCYDF-PCK 302
Y RPRC RP + Y P L +PCCY PC+
Sbjct: 179 YTLRPRCYTLRPCRYMLRPCRYMLRPCRYML-RPCCYTLRPCR 220
>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
Length = 1122
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 87 NSGKMSVLPRGIENCRPIARYGYVTAESSIYNKRPR 194
NSGK SV G +CR + G TA S + + P+
Sbjct: 195 NSGKASVFDSGRYSCRAVNNLGQDTAYSEVTFREPK 230
>SB_20692| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 246 HNKPLFPSGVVAASVVHIEVFYCK 175
H KP FP +V ++VV I+VF C+
Sbjct: 39 HTKP-FPESIVPSNVVSIDVFVCR 61
>SB_29595| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=1.90001e-40)
Length = 700
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 228 PSGVVAASVVHIEV-FYCKCYFQLLHIHTLQLAYSFQYLVAVL 103
P +AA+ H E +YCK HI L Y F+YLVA L
Sbjct: 611 PPVELAAAAAHSERRWYCKPCESSEHIELLAFPYVFRYLVAEL 653
>SB_28322| Best HMM Match : Ion_trans (HMM E-Value=1.6e-41)
Length = 263
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 222 GVVAASVVHIEVFYCKCYFQLLHIHTLQLAYSFQYL 115
G AAS+++ FY C F +L++ + +F+YL
Sbjct: 201 GNTAASIIYFITFYFFCSFLMLNLFVAVIMDNFEYL 236
>SB_22683| Best HMM Match : UPAR_LY6 (HMM E-Value=2.6)
Length = 237
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +3
Query: 123 ENCRPIARYGYVTAESSIYNKRPRCGQPRPQPHQRETTAYCGGPSNVPLEKPCCYDFPC 299
+ C+ I + A +++Y R C Q HQ E T N+ E CCYD C
Sbjct: 40 DTCQSIYIVRRLNATTNLYTYRRACAQK----HQCELTIKRCESLNMYCENECCYDNLC 94
>SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +3
Query: 276 PCCYDFPCKADCFNHGACTRPSGRYARTVWYPGECCPVVFP 398
P C C +C HG+C SG Y G C + P
Sbjct: 357 PDCTIRVCPNNCSGHGSCNSASGLCTCAPGYAGTDCSLAVP 397
>SB_27516| Best HMM Match : DUF827 (HMM E-Value=0.33)
Length = 253
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +2
Query: 338 QWSIRTYCLVSRRMLPGGFSLSSLHLPKSTLPSMLLPYVQQTCVKESQL 484
+W YC++++ P GF+ SS H+ + S Y++ +S++
Sbjct: 142 KWPAGQYCILAKGPCPAGFTRSSGHMLAINMYSHTPTYIKTASFGDSKI 190
>SB_12094| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00041)
Length = 754
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 114 RGIENCRPIARYGYVTAESSIYNKRPRCGQPRPQPHQRETTAYCGG 251
R E C+ + + YN+ R +P +P ++ TA CGG
Sbjct: 494 RSAEECQLKYQGQLEQRNTRAYNRPERAAKPSAKPKDQKITALCGG 539
>SB_47919| Best HMM Match : Uricase (HMM E-Value=8.2e-35)
Length = 537
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -2
Query: 255 WVLHNKPLFPSGVVAASVVHIEVFYCKCYFQLLHIHTLQLAY 130
+V HN PL S + A+SVVH Y K +LL I Y
Sbjct: 119 FVGHNVPLNGSSICASSVVHESKGYGKTGVRLLKIKRRSTLY 160
>SB_57054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 955
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +3
Query: 144 RYGYVTAESSIYNKRPRCGQPRPQPHQRETTAYCGGPSN 260
R G+ + S GQ RP QR + YCG P +
Sbjct: 229 RAGWSGRQPSYQQYGSSFGQQRPNEQQRGSCRYCGAPGH 267
>SB_36915| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 304
Score = 27.9 bits (59), Expect = 9.2
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = -3
Query: 227 PLVWLRPRLSTSRSFIVNATFSCYISIPCN 138
P + + +L+ + ++++ TF CY+ I C+
Sbjct: 218 PSINSQQKLAVTMAYVIGVTFMCYLPIACS 247
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,386,582
Number of Sequences: 59808
Number of extensions: 490012
Number of successful extensions: 1357
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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