Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b11
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25880.2 68417.m03722 pumilio/Puf RNA-binding domain-containi...    31   0.61 
At4g25880.1 68417.m03721 pumilio/Puf RNA-binding domain-containi...    31   0.61 
At1g65295.1 68414.m07404 expressed protein                             29   4.3  
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa...    28   5.7  
At2g32530.1 68415.m03974 cellulose synthase family protein simil...    28   7.6  
At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kina...    27   10.0 
At4g33080.1 68417.m05678 protein kinase, putative contains prote...    27   10.0 
At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p...    27   10.0 
At2g32540.1 68415.m03975 cellulose synthase family protein simil...    27   10.0 
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si...    27   10.0 

>At4g25880.2 68417.m03722 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile:PF00806 Pumilio-family RNA
           binding domains
          Length = 852

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 177 YNKRPRCGQPRPQPHQRETTA-YCGGPSNV 263
           Y + PR GQP  QPHQ++  A +  G SN+
Sbjct: 244 YPREPRYGQPERQPHQQQNNATWIQGGSNM 273


>At4g25880.1 68417.m03721 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile:PF00806 Pumilio-family RNA
           binding domains
          Length = 861

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 177 YNKRPRCGQPRPQPHQRETTA-YCGGPSNV 263
           Y + PR GQP  QPHQ++  A +  G SN+
Sbjct: 244 YPREPRYGQPERQPHQQQNNATWIQGGSNM 273


>At1g65295.1 68414.m07404 expressed protein
          Length = 115

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 243 CGGPSNVPLEKPCCYDFPCKADCFNHGACT 332
           CGG   + L  PCCY   C       G C+
Sbjct: 73  CGGAKGLCLPSPCCYAINCNIPNRPFGYCS 102


>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 772

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 410 HLPKSTLPSMLLPYVQQTCVKESQLKPV-CP*CLVY 514
           H P S  P  +L +    CV+ S   PV CP CL Y
Sbjct: 216 HSPDSMDPDKMLQWDDIICVRYSTPSPVQCPICLEY 251


>At2g32530.1 68415.m03974 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit from Arabidopsis
           thaliana [gi:5230423], cellulose synthase-5 from Zea
           mays [gi:9622882]
          Length = 755

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 258 YWVLHNKPLFPSGVVAASVVHIEVFYC 178
           Y +LHN  LFP GV    VV +   +C
Sbjct: 556 YCLLHNAALFPKGVYLGIVVTLVGMHC 582


>At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to SP|Q9Z1T6 FYVE
           finger-containing phosphoinositide kinase (EC 2.7.1.68)
           (1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
           (PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF01363: FYVE zinc finger, PF00118:
           TCP-1/cpn60 chaperonin family
          Length = 1756

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 339 SGRYARTVWYPGECCPVVFPCQA 407
           S   +R  W P + CPV + C A
Sbjct: 25  SSNMSRDFWMPDQSCPVCYECDA 47


>At4g33080.1 68417.m05678 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 519

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 405 LDREKPPGSILLDTKQYVRIDHWALCKRRD*SN-PLCKENHSS 280
           + R+  P ++LLD   ++++  + LCK  D  N P  +EN ++
Sbjct: 214 IHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCRNLPSIQENRAT 256


>At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol
           protease, putative contains similarity to cysteine
           proteinase RD21A (thiol protease) GI:435619, SP:P43297
           from [Arabidopsis thaliana]
          Length = 452

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 16/67 (23%), Positives = 24/67 (35%)
 Frame = +3

Query: 198 GQPRPQPHQRETTAYCGGPSNVPLEKPCCYDFPCKADCFNHGACTRPSGRYARTVWYPGE 377
           G   P+P    +   C   +  P +  CC  +     C++ G C   S   A        
Sbjct: 349 GSNPPKP-PAPSPVVCDKSNTCPAKSTCCCLYEYNGKCYSWGCCPYES---ATCCDDGSS 404

Query: 378 CCPVVFP 398
           CCP  +P
Sbjct: 405 CCPQSYP 411


>At2g32540.1 68415.m03975 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit from Arabidopsis
           thaliana [gi:5230423], cellulose synthase-5 from Zea
           mays [gi:9622882]
          Length = 755

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 258 YWVLHNKPLFPSGVVAASVVHIEVFYC 178
           Y +LHN  LFP GV    ++ +   +C
Sbjct: 556 YCLLHNSALFPKGVYLGIIITLVGIHC 582


>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
            similarity to RNA helicase/RNAseIII CAF protein
            [Arabidopsis thaliana] GI:6102610; contains Pfam profiles
            PF00270: DEAD/DEAH box helicase, PF00271: Helicase
            conserved C-terminal domain
          Length = 1324

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +1

Query: 202  NRGRNHTRGKQRLIVEDPV 258
            +RG+ H RGK+++I++D V
Sbjct: 1037 SRGKKHIRGKKKMIMDDDV 1055


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,373,459
Number of Sequences: 28952
Number of extensions: 325660
Number of successful extensions: 831
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)