Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b10
         (620 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11868| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)                  33   0.14 
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_36925| Best HMM Match : EGF (HMM E-Value=1.5e-16)                   29   4.0  
SB_16470| Best HMM Match : EGF (HMM E-Value=1.7e-06)                   29   4.0  
SB_52626| Best HMM Match : DUF437 (HMM E-Value=3.2)                    28   5.3  
SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      28   5.3  
SB_23559| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)            27   9.3  
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    27   9.3  

>SB_11868| Best HMM Match : zf-CHC2 (HMM E-Value=0.64)
          Length = 500

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
 Frame = +1

Query: 112 RINKRISSTSLSYDSGDEAND----TRVPYEQKSDE--GNILDEIFTIVPDSESPVVNKM 273
           R+N+R+  TS++YD  +  ND    + +   +++D   G    E          PVVN++
Sbjct: 134 RMNERLYQTSITYDHNNSMNDNADVSDIEPSRQTDNLTGECSSEATRETIWESIPVVNRV 193

Query: 274 MNSVEFS 294
           MNSV F+
Sbjct: 194 MNSVRFT 200


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +1

Query: 220  DEIFTIVPDSESPVVNKMMNSVEFSDVNFIPASG-GSTVPASETISIAADD 369
            D+    V  S +PV NK+ ++++  D +   ASG G T PAS   SI + +
Sbjct: 1628 DKFEDAVISSPTPVNNKLKDALKLLDASDASASGSGVTPPASYKTSIVSGE 1678


>SB_36925| Best HMM Match : EGF (HMM E-Value=1.5e-16)
          Length = 908

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -2

Query: 292 KTQQNSSFYLLQEILNLVRL*KSHPVCFLHQTFVHMEHGYRLLRHQNRKIKM*RKFS 122
           KT Q +S ++  ++  + R    HP  +LH  F  M   +R L +   KI + RK++
Sbjct: 107 KTSQENSQFIYIDLRGVSRAHNKHPGYWLHSAFASMPTQHREL-YTIAKISIQRKYN 162


>SB_16470| Best HMM Match : EGF (HMM E-Value=1.7e-06)
          Length = 484

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -2

Query: 292 KTQQNSSFYLLQEILNLVRL*KSHPVCFLHQTFVHMEHGYRLLRHQNRKIKM*RKFS 122
           KT Q +S ++  ++  + R    HP  +LH  F  M   +R L +   KI + RK++
Sbjct: 410 KTSQENSQFIYIDLRGVSRAHNKHPGYWLHSAFASMPTQHREL-YTIAKISIQRKYN 465


>SB_52626| Best HMM Match : DUF437 (HMM E-Value=3.2)
          Length = 267

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +1

Query: 82  IGIAYNYYVERI---NKRISSTSLSYDSGDEANDTRVPYEQKSDEGNILD 222
           +G+  N +VER    ++ I + SL   +G++    RV  +     GNILD
Sbjct: 14  LGVELNRFVERFYIESRAIDTESLCIVAGEKVWSVRVDIQVLDHSGNILD 63


>SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1400

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +1

Query: 130 SSTSLSYDSGDEANDTRVPYEQKSDEGNILDEIFTIVPDSESPVVNKMMNSV 285
           +ST    D GD+ ND +    +KSDE N +  +  +    ++ + N+ +N++
Sbjct: 164 NSTGNEIDQGDDTNDRKKLERKKSDEANRI-SVSKLKNIFDTAIANESVNAL 214


>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1080

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 57  YYYLHALVHRDRVQLLRGAH*QENFLYI 140
           YYY+H   + D+    RGAH   N++++
Sbjct: 16  YYYIHLKYNNDKRSKYRGAHTSCNYIHL 43


>SB_23559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 124 RISSTSLSYDSGDEANDTRVPYEQK-SDEGNILDEIFTIVPDSESPVVN 267
           RIS  SL+++SG+  ND    +  K  DEG  LD   +   D E  V++
Sbjct: 159 RISEESLAHNSGELENDPGNGFNPKGGDEGTPLDAKKSAQGDPELGVIS 207


>SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 217 LDEIFTIVPDSESPVVNKMMNSVEFSDVNFIPASGGST 330
           L EIF+ V  +  P+ N    SVE  D+++IP    ST
Sbjct: 459 LAEIFSSVKLTPIPLSNNPTPSVESDDMDYIPTKDTST 496


>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2835

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 306 EINIGKLNRI-HHFIYYRRF*IWYDCENLIQYVSFIRLLFI 187
           + N GK  R+ HH+     F I+ +C NL+   S  + LFI
Sbjct: 477 DYNAGKPARVVHHYKSDGIFHIYVNCSNLVSAYSINKTLFI 517


>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
          Length = 458

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = +1

Query: 205 EGNILDEIFTIVPDSESPVVNKMMNSVEFSDVNFIPASGGSTVPASETI 351
           EGN  DEIF +      P     +   +F ++NF      S   AS  +
Sbjct: 224 EGNYDDEIFHVTAIGFPPAEPSKVTRAQFGNINFFGGPSTSCAKASSKL 272


>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +1

Query: 109  ERINKRISSTSLS-YDSGDEANDTRVPYEQKSDEGNILDEIFTI--VPDSESPVVNKM 273
            E +   I+++ +   ++G+E+  T+   E K D   + D++FT+    +    ++NK+
Sbjct: 2393 EEVKSDINNSKVEDTNNGEESEQTKEQQENKEDSLAVSDDLFTLDFTEEQTQEIINKV 2450


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,076,503
Number of Sequences: 59808
Number of extensions: 321675
Number of successful extensions: 737
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)