Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10b09
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.091
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)                   33   0.28 
SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)                     33   0.28 
SB_10751| Best HMM Match : TNFR_c6 (HMM E-Value=7.6e-17)               30   2.0  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_38994| Best HMM Match : Integrin_beta (HMM E-Value=0)               28   7.9  

>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1712

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = +1

Query: 328  TNKETCQECPSCACPSDFNPSTPSMYD----CRKYGHCLPSNDLITRFECLPNFPTGIFR 495
            T+K   ++CP C   + F        D    C KY +C   +D +    C PNF    FR
Sbjct: 1335 TDKSDEEDCPPCK-ENQFRCDNGQCIDGDPRCDKYKNCTDGSDELGCATCEPNF----FR 1389

Query: 496  CTTGETLGS 522
            C TG+ + +
Sbjct: 1390 CNTGKCISA 1398


>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
          Length = 1284

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = +1

Query: 331  NKETCQECPSCACPSDFNPSTPSMYDCRKYGHCLPSNDLITRFECLPNFPTGI-FRC 498
            N   C  C  C   +DF+       DC+ + H    N     +ECL + P  I F C
Sbjct: 927  NGNYCPICEKCYSDNDFDSKMMHCNDCQHWVHASCQNINPDEYECLSDLPDSIPFVC 983


>SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)
          Length = 458

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = +1

Query: 331 NKETCQECPSCACPSDFNPSTPSMYDCRKYGHCLPSNDLITRFECLPNFPTGI-FRC 498
           N   C  C  C   +DF+       DC+ + H    N     +ECL + P  I F C
Sbjct: 268 NGNYCPICEKCYSDNDFDSKMMHCNDCQHWVHASCQNINPDEYECLSDLPDSIPFVC 324


>SB_10751| Best HMM Match : TNFR_c6 (HMM E-Value=7.6e-17)
          Length = 738

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
 Frame = +1

Query: 322 VETNKETCQECPSCACPSDFNP------STPSMYDCRKYGHCLPSNDLITRFECLP 471
           ++T K+TCQECP+C      +P      + P+ + C K       ++ I    C P
Sbjct: 175 LKTLKKTCQECPTCQVGHGLSPPCGSVLTNPANHSCVKCAPGKSFSESIDSSSCKP 230


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 325 ETNKETCQECPSCA-CPSDFNPSTPSMYDCRKYGHCLPSNDLITRFECLPNF 477
           E  K++C+ CP    C +  + S  + Y C K  +C    +  T++ C P +
Sbjct: 290 ELQKDSCKVCPEGHFCDNKNDLSDYTSYICPKGYYCPNGTEYSTQYGCPPGY 341


>SB_38994| Best HMM Match : Integrin_beta (HMM E-Value=0)
          Length = 467

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 16/111 (14%)
 Frame = +1

Query: 343 CQECPSCA---------CPSDFNPSTPSMYDCRKYGHCLP---SNDLITRFECLPNFPTG 486
           C+ECPSC          C         S+ DC+K   C P   S + + + E L     G
Sbjct: 299 CEECPSCEGGICSRSKDCILCTKFEKKSLDDCKKLNRCEPIVQSVEFVDKIETLT--AKG 356

Query: 487 IFRCTTGETLGSGADKGCCYQCPEYFAYQHMT---FYDLHLY-LRPCRKPS 627
           ++RC        GA   C Y    YF Y        YDL++   + C +P+
Sbjct: 357 LYRC-------EGARDKCTY----YFTYDKRADGKTYDLYVQEKQDCPEPA 396


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,267,853
Number of Sequences: 59808
Number of extensions: 378628
Number of successful extensions: 838
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)